RetrogeneDB ID: retro_ogar_2109

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873591.1:1946622..1947126(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DAZAP2
• Ensembl ID: ENSOGAG00000007977
• Aliases: None
• Description: DAZ associated protein 2 [Source:HGNC Symbol;Acc:2684]

Sequence

>retro_ogar_2109
ATGAACAGCAAAGTCAATATCCAACACAGCCAACCTAGCCTGTGAAGCCTCCTAGGAATCCAGTATACCCTAAGAACTTG
CATCTTCTTCAAGGCTCTACCCTATACTGATGCTGAACCTGCCTACTCAGAGCTCTATCATCCAAGCTTTGTGTATCCAG
GGGCTGCCACAGTCCCTGCCATGTCAGCTGCATTTTCTGGTGCCCCTATGTGTCTTCTCATGGCTCAGTCTGTGGTTGTT
GGGCCTTTAGTTTTCATAATCCCTATGGATTTTATCCAATTGGTCCCATCTATCCACATGGTTCAATTGTGCCAGTGGAA
GAAGGTTATGATACAAGTGCCAGATTTGGAGGTGGGGCTACCTGCTGGCAGCATTTGTCCTCCATCTCCTGGATGCCCTC
CCAATGCTGCTCAGCCTTAAGTTATGCAGGGAGCCAGCATTCTCGTAACTCAGAGGAAAGGGAACTTCCTCATGGGTGGC
TCAAATGGTAGCTGCACTGTTTGG

Alignment

ORF - retro_ogar_2109 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.26 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MNSK-GQYPTQPTYPVQPPGNPVYPQTLHLPQ-APPYTDAPPAYSELYRPSFVHPGAATVPTMSAAFPGA
          MNSK..QYPTQPT.PV.PP.NPVYP..LHL.Q.A.PYTDA.PAYSELY.PSFV.PGAATVP.MSAAF.GA
Retrocopy MNSK<SQYPTQPT*PVKPPRNPVYPKNLHLLQ>ALPYTDAEPAYSELYHPSFVYPGAATVPAMSAAFSGA

Parental  SLYLPMAQSVAVGPLGSTIPM-AYYPVGPIYPPGSTVLVEGGYDAGARFGAGAT-AGSIPPPPPGCPPNA
          ...L.MAQSV.VGPL...IPM...YP.GPIYP.GS.V.VE.GYD..ARFG.GAT.AGSI.PP.PGCPPNA
Retrocopy PMCLLMAQSVVVGPLVFIIPM<GFYPIGPIYPHGSIVPVEEGYDTSARFGGGAT>AGSICPPSPGCPPNA

Parental  AQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW
          AQ..VMQGA..LVTQRKGNF.MGGS.G..T.W
Retrocopy AQP*VMQGASILVTQRKGNFLMGGSNGSCTVW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2109 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000017661	2 retrocopies	retro_cjac_636, retro_cjac_793,
Homo sapiens	ENSG00000183283	1 retrocopy	retro_hsap_2370,
Gorilla gorilla	ENSGGOG00000026861	1 retrocopy	retro_ggor_1800,
Myotis lucifugus	ENSMLUG00000009959	1 retrocopy	retro_mluc_351,
Macaca mulatta	ENSMMUG00000001884	1 retrocopy	retro_mmul_958,
Nomascus leucogenys	ENSNLEG00000017776	1 retrocopy	retro_nleu_360,
Otolemur garnettii	ENSOGAG00000007977	3 retrocopies	retro_ogar_2109 , retro_ogar_2139, retro_ogar_3130,
Pongo abelii	ENSPPYG00000004524	1 retrocopy	retro_pabe_2140,