RetrogeneDB ID:

retro_ogar_2071

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873587.1:4531200..4531708(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NUDT5
Ensembl ID:ENSOGAG00000005816
Aliases:None
Description:nudix (nucleoside diphosphate linked moiety X)-type motif 5 [Source:HGNC Symbol;Acc:8052]


Retrocopy-Parental alignment summary:






>retro_ogar_2071
AACTCCTCTCAGTTCAGTGTAGTGCCATAGTTAATTTCAGAAGGAAAATGGGTCAAGTCTGAACAAAACAATTTACAAGG
ATCCTACTGGTAAAATTAGAACCTGGGAAACAGCAAAGCATACAACCAGGAAGGGATAGTCTGCTGAGGGTCTAGCAGTC
ATCCCTGTATTGCAGAGAACTCTTCATTATGAGTGTATCATTCTAGTGAAACAGTTCCGACCACTGATGGGTGGCTATCG
CCTAGAGTTCTTGCTGGTCTCATAGATGATGATGAAAGCCCAGAAGCAGCTGCTTTCTGAGAGCTTGAGGAAACTGACTA
CGAAGGTGATGTTGCTGAGTGTTCTCCAGCTGTTTGTATGGACCCCGTATGTCAAACTACAAACACACATCATGACAGTA
ACCATTAATAGGGATGATGCAGAAAATGTGCAACCCAAGCCAAAGCCAGGGGATGGAGGATTTGTGGAAGTAATTTCTTT
ACCAAAGAATGACCAGCTAAAGAGAATC

ORF - retro_ogar_2071 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.4 %
Parental protein coverage: 78.38 %
Number of stop codons detected: 3
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalNGRQCIISEELISEGKWVK-LEKTTYMDPTGKTSLNRTWETVKRMTRKGQSADGVAVIPVLQRTLHYECI
N..Q......LISEGKWVK.L.KT.Y.DPTGK....RTWET.K..TRKG.SA.G.AVIPVLQRTLHYECI
RetrocopyNSSQFSVVP*LISEGKWVK>LNKTIYKDPTGKI---RTWETAKHTTRKG*SAEGLAVIPVLQRTLHYECI
ParentalILVKQFRPPMGGYCLEFP-AGLIDDDESPEAAALRELEEETGYKGDVAECSPAVCMD-PGLSN-CTTHIV
ILVKQFRP.MGGY.LEF..AGLIDDDESPEAAA..ELEE.T.Y.GDVAECSPAVCMD.P..SN...THI.
RetrocopyILVKQFRPLMGGYRLEFL<AGLIDDDESPEAAAF*ELEE-TDYEGDVAECSPAVCMD<PRMSN<LQTHIM
ParentalTVTINGDDAENVRPKPKPGDGEFVEVISLPKNDLLKRI
TVTIN.DDAENV.PKPKPGDG.FVEVISLPKND.LKRI
RetrocopyTVTINRDDAENVQPKPKPGDGGFVEVISLPKNDQLKRI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide