RetrogeneDB ID: retro_ogar_201

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873523.1:21122452..21123460(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000025407
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: PRKAG2
• Ensembl ID: ENSOGAG00000008645
• Aliases: None
• Description: protein kinase, AMP-activated, gamma 2 non-catalytic subunit [Source:HGNC Symbol;Acc:9386]

Sequence

>retro_ogar_201
ATGGAGACGGTCATTTCTCCAGATAGTTCCCCAGCTCTGGAAAATGAGCATCCTCAAGAGACCTCCGAATCCAACAATAG
TGTGTATACTTCCTTCATGAAGTCTCATCGCTGTTATGACCTGATTCCCACAAGCTCCAAATTGGTTGTATTTGATACAT
CCCTGCAGGTGAAGAAAGCTTTCTTTGCTTTGGTGACTAATGGTGTACGAGCTGCCCCTTTGTGGGATAGTAAGAAACAA
AGTTTTGTGGGCATGCTGACCATCACTGATTTCATCAATATCCTGCATCGCTACTATAAATCAGCTTTGGTACAGATCTA
TGAACTAGAAGAACACAAGATAGAGACATGGAGAGAGGTGTACCTACAGGACTCCTTTAAACCGCTTGTCTGCATTTCTC
CTAATGCCAGCTTGTTTGATGCTGTATCTTCATTAATTCGAAACAAGATCCACAGGCTACCAGTTATTGACCCAGAATCA
GGAAACACCTTGTACATCCTCACCCACAAACGCATCCTGAAGTTCCTCAAATTGTTTTTCTCTCCTCAGATCACAGAGTT
CCCTAAACCAGAGTTCATGTCTAAGTCTCTGGAAGAGCTACAGATTGGCACCTATGCCAATATTGCTATGGTCCGTACTA
CCACCCCTGTCTACGTGGCCCTGGGCATCTTTGTTCAACACCGAGTCTCAGCCCTGCCAGTGGTGGATGAGAAAGGGCGT
GTGGTGGACATCTACTCCAAGTTTGATGTTATCAATCTCGCAGCAGAAAAGACCTATAATAACCTAGATGTGTCTGTGAC
TAAAGCCCTGCAACATCGATCCCATTACTTTGAAGGCGTTCTCAAGTGCTACCTGCATGAGACTCTGGAGACCATCATCA
ACAGGCTGGTAGAAGCAGAGGTTCACCGACTTGTCGTAGTGGATGAGAATGATGTGGTCAAGGGAATTGTATCACTGTCT
GATATCCTGCAGGCCCTGGTGCTCACAGGTGGAGAGAAGAAGCTCTGA

Alignment

ORF - retro_ogar_201 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.44 %
• Parental protein coverage: 74.64 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EAVEDSESGVYMRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTI
          .....S...VY..FM.SH.CYD..PTSSKLVVFDT.LQVKKAFFALV.NGVRAAPLW.SKKQSFVGMLTI
Retrocopy QETSESNNSVYTSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTI

Parental  TDFINILHRYYKSPMVQIYELEEHKIETWRDTELYLQETFKPLVNISPDASLFDAVYSLIKNKIHRLPVI
          TDFINILHRYYKS..VQIYELEEHKIETWR..E.YLQ..FKPLV.ISP.ASLFDAV.SLI.NKIHRLPVI
Retrocopy TDFINILHRYYKSALVQIYELEEHKIETWR--EVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVI

Parental  DPISGNALYILTHKRILKFLQLFMS----DMPKPAFMKQNLDELGIGTYHNIAFIHPDTPIIKALNIFVE
          DP.SGN.LYILTHKRILKFL.LF.S......PKP.FM...L.EL.IGTY.NIA.....TP...AL.IFV.
Retrocopy DPESGNTLYILTHKRILKFLKLFFSPQITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQ

Parental  RRISALPVVDESGKVVDIYSKFDVINLAAEKTYNNLDITVTQALQHRSQYFEGVVKCNKLEILEAIVDRI
          .R.SALPVVDE.G.VVDIYSKFDVINLAAEKTYNNLD..VT.ALQHRS.YFEGV.KC...E.LE.I..R.
Retrocopy HRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRL

Parental  VRAEVHRLVVVNEADSIVGIISLSDILQALILT
          V.AEVHRLVVV.E.D...GI.SLSDILQAL.LT
Retrocopy VEAEVHRLVVVDENDVVKGIVSLSDILQALVLT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_201 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013406	1 retrocopy	retro_amel_1890,
Felis catus	ENSFCAG00000003842	2 retrocopies	retro_fcat_237, retro_fcat_240,
Otolemur garnettii	ENSOGAG00000008645	1 retrocopy	retro_ogar_201 ,