RetrogeneDB ID:

retro_ogar_1815

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873567.1:13070041..13070836(+)
Located in intron of:ENSOGAG00000014054
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000014027
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_1815
CCAAAAGGAAAGAAGGCCAAAGGGAAGAAGGTGGCCCTGGCCCCTGCCACGGTGAAGAAGCAGGAGGCCAAGAAGGTAGT
GAATCCTCTGTTCAAGAAAAGGCCAAAGAACTTCGGCATTGGGCAGGACATCCAGCCCAAGAGGGACCTCACCCGCTTTG
TCAAATGGCCCTGCTACATCCGGTTGCAGCAGCAAAGAGCCATCCTCTACAAGCGGCTGAAAGTACCTCCTGCCATTAAT
CAGTTCACCCAGGCATTGGACCACCAAACAGCTACTCAGCTGCTCAAGCTGGCCCACAAGTACAGACCAGAAACAAAGCA
AGAGAAGAAGCAGGGACTGTTGGCCCGGGCCGAGAAGAAAGCTGCGGGCAAAGGGGATGCCCCCACTAAGAGACCACCTG
TCCTTAGAGCAGGGGTTAACACTGTCAACACGTTGGTGGGGAACAAGAAGGCTCAGCTGGTGGTGACTGCACATGATGTG
GACCCCATTGAGCTGGCTGTTTTCCTGCCTGCCCTGTGTCGGAAGATGGGGGTCCCTTACTGCATTATCAAGGGGAAGGC
CAGGCTGGGGTGTCTCCTCCACAGGAAAACCTGCACCACTGTGGCCTTCACGCAGGTTAACTCAGAAGACAAAGGAGCTC
TAGCTAAGCTGGTGGAAGCCATCAGGACCAATTACAAGGACAGATACAATGAGATCTGCCATCACTGAGGAGGCAACGTC
CTGGGCCTGAAGTCTGTGGTTCACATTGCCAAGCTGGAAAAGGCTAAGGCTAAAGAACTTGCAACTAAACTGGGC

ORF - retro_ogar_1815 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.7 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILY
PKGKKAKGKKVA.APA.VKKQEAKKVVNPLF.KRPKNFGIGQDIQPKRDLTRFVKWP.YIRLQ.QRAILY
RetrocopyPKGKKAKGKKVALAPATVKKQEAKKVVNPLFKKRPKNFGIGQDIQPKRDLTRFVKWPCYIRLQQQRAILY
ParentalKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVN
KRLKVPPAINQFTQALD.QTATQLLKLAHKYRPETKQEKKQ.LLARAEKKAAGKGD.PTKRPPVLRAGVN
RetrocopyKRLKVPPAINQFTQALDHQTATQLLKLAHKYRPETKQEKKQGLLARAEKKAAGKGDAPTKRPPVLRAGVN
ParentalTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSED
TV.TLV.NKKAQLVV.AHDVDPIEL.VFLPALCRKMGVPYCIIKGKARLG.L.HRKTCTTVAFTQVNSED
RetrocopyTVNTLVGNKKAQLVVTAHDVDPIELAVFLPALCRKMGVPYCIIKGKARLGCLLHRKTCTTVAFTQVNSED
ParentalKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG
KGALAKLVEAIRTNY.DRY.EI..H.GGNVLG.KSV..IAKLEKAKAKELATKLG
RetrocopyKGALAKLVEAIRTNYKDRYNEICHH*GGNVLGLKSVVHIAKLEKAKAKELATKLG