RetrogeneDB ID: retro_ogar_1774

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873565.1:1906293..1907240(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZNF277
• Ensembl ID: ENSOGAG00000005326
• Aliases: None
• Description: zinc finger protein 277 [Source:HGNC Symbol;Acc:13070]

Sequence

>retro_ogar_1774
GACAGTAAGGATTGTATCCTAGAGCCGCTTTCCCTGCCAGAAAGTCCAGGTGGCACCACCACTTTAGAAGGTTCTCCATC
TGTGCCTTGTATTTTCTGTGAAGAACATTTTCCTGTGGCTGAAAAGACAAACTTCTAAAGCACATGATTATTGAGCACAG
GTTTGTCATAGCTGATGTCAAGTTGGTTGCCAATTTCCAAAGGTACATTTTATATTGGAAGAAAAGGTTTGCTGAACAAC
CCATCACAGATTTCTGTAGTGTGATAAGAATCAATTTCACAGCTCCATTTGAAGAACAAGAAAATTATTTTTTGTTATGT
GATGTTTTACCAGAAGATAGAATTCTTAGCGAGGAGCTTCAGAAACAAAGACTGAAAGAAATTCTAGAACAGCAGCAGCA
AGAATGAAATGATACCAATTTCCATGGCATTTGTATGTTTTGCAATGGAGAATTCCTCAGAAACAGATCTGTTCTTTTGA
ACCACATGGCCAGAGAACATGCTTTCAACATTGGATTGCCAGACAACATTGTAAATTGCAATGAATTTCTGTGTATGTTA
CAGAAAAAGCTTGACAGTTTGCAGTGTTTGTACTGTGAGAAAACCTTTAGGGACAAAAATACACTTAAAGATCACATGAG
GATAAAACAGCATCATAGGATCAATCCTAAGAACAGAGAATATGACCGATTTTATGTCATCAATTACTTGGAACTCGGAA
AATCATGGGAAGAAGTTCAGCTGGAAGATGATCGGGAGTTGCTAGACCATCAGGAAGAGGACTGGTCTGATTGGGAAGAA
CACCCTGCCTCTGCTGTCTGCTGATTTTGTGAAAAGCAAGCAGAAGCAATCGAGAAATTGTATGTCCACATGGAGGATGC
ACATGAATTTGATCTTCTCAAAATAAAACCAGAACTTGGATTAAATTTCTATCAAGAAGTGAAACTG

Alignment

ORF - retro_ogar_1774 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.58 %
• Parental protein coverage: 70.69 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  DSKDCILEPLSLPESPGGTTTLEGSPSVPCIFCEEHFPVAEQ-DKLLKHMIIEHKFVIADVKLVADFQRY
          DSKDCILEPLSLPESPGGTTTLEGSPSVPCIFCEEHFPVAE..DKLLKHMIIEH.FVIADVKLVA.FQRY
Retrocopy DSKDCILEPLSLPESPGGTTTLEGSPSVPCIFCEEHFPVAEK<DKLLKHMIIEHRFVIADVKLVANFQRY

Parental  ILYWKKRFAEQPITDFCSVIRINSTAPFEEQENYFLLCDVLPEDRILREELQKQRLKEILEQQQQERNDT
          ILYWKKRFAEQPITDFCSVIRIN.TAPFEEQENYFLLCDVLPEDRIL.EELQKQRLKEILEQQQQE.NDT
Retrocopy ILYWKKRFAEQPITDFCSVIRINFTAPFEEQENYFLLCDVLPEDRILSEELQKQRLKEILEQQQQE*NDT

Parental  NFHGICMFCNGEFLGNRSVLLNHMAREHAFNIGLPDNIVNCNEFLCILQKKLDSLQCLYCEKTFRDKNTL
          NFHGICMFCNGEFL.NRSVLLNHMAREHAFNIGLPDNIVNCNEFLC.LQKKLDSLQCLYCEKTFRDKNTL
Retrocopy NFHGICMFCNGEFLRNRSVLLNHMAREHAFNIGLPDNIVNCNEFLCMLQKKLDSLQCLYCEKTFRDKNTL

Parental  KDHMRKKQHRRINPKNREYDRFYVINYLELGKSWEEVQLEDDRELLDHQEEDWSDWEEHPASAVCLFCEK
          KDHMR.KQH.RINPKNREYDRFYVINYLELGKSWEEVQLEDDRELLDHQEEDWSDWEEHPASAVC.FCEK
Retrocopy KDHMRIKQHHRINPKNREYDRFYVINYLELGKSWEEVQLEDDRELLDHQEEDWSDWEEHPASAVC*FCEK

Parental  QAEAIEKLYVHMEDAHEFDLLKIKSELGLNFYQQVKL
          QAEAIEKLYVHMEDAHEFDLLKIK.ELGLNFYQ.VKL
Retrocopy QAEAIEKLYVHMEDAHEFDLLKIKPELGLNFYQEVKL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1774 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000016891	2 retrocopies	retro_cjac_558, retro_cjac_698,
Mus musculus	ENSMUSG00000055917	1 retrocopy	retro_mmus_3684,
Otolemur garnettii	ENSOGAG00000005326	1 retrocopy	retro_ogar_1774 ,