RetrogeneDB ID: retro_ogar_1769

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873564.1:9593757..9594102(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000032451
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ENSA
• Ensembl ID: ENSOGAG00000005863
• Aliases: None
• Description: endosulfine alpha [Source:HGNC Symbol;Acc:3360]

Sequence

>retro_ogar_1769
ATGTCCGAGAAACAAGAAGAGAACCATGTGGAGGAGACTGGCGAGGAGAAGCAGGACATTCAGGAGAAAGAAAGTATTCT
CCCAGAGAGAGCTGAAGAGGCAAAGCTGAAGGCCAAATATCCAAGCCTAGGACAAAAGCCTGGAGGGTCTGACTTCCTCA
TGAAGAGACTCCAAAAAGGGCAAAAATACTTGGACTCAGGAGACTACAACATGGCCAAAGCCAAGATGAAGAATAAGCAG
CTGCCAAGTACAGGACCAGACAGGAACCTCGTGACTGGTGACCACATCCAGACCCCACAGGATCTGCCCCAGAGAAAGTC
CTCACTCGTCACCAGCAAGCTTGCG

Alignment

ORF - retro_ogar_1769 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.1 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSQKQEEENHAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDY
          MS.KQEE.NH.EETGEEKQD.QEKE.ILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKY.DSGDY
Retrocopy MSEKQEE-NHVEETGEEKQDIQEKESILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYLDSGDY

Parental  NMAKAKMKNKQLPSTGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLA
          NMAKAKMKNKQLPSTGPD.NLVTGDHI.TPQDLPQRKSSLVTSKLA
Retrocopy NMAKAKMKNKQLPSTGPDRNLVTGDHIQTPQDLPQRKSSLVTSKLA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1769 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000143420	3 retrocopies	retro_hsap_1449, retro_hsap_2208, retro_hsap_2452,
Mus musculus	ENSMUSG00000038619	1 retrocopy	retro_mmus_2675,
Oryctolagus cuniculus	ENSOCUG00000003267	3 retrocopies	retro_ocun_296, retro_ocun_396, retro_ocun_722,
Otolemur garnettii	ENSOGAG00000005863	3 retrocopies	retro_ogar_1769 , retro_ogar_1911, retro_ogar_2262,
Otolemur garnettii	ENSOGAG00000013865	1 retrocopy	retro_ogar_591,
Pongo abelii	ENSPPYG00000000893	2 retrocopies	retro_pabe_1803, retro_pabe_2081,
Rattus norvegicus	ENSRNOG00000048617	1 retrocopy	retro_rnor_1776,