RetrogeneDB ID:

retro_ogar_1578

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873553.1:5601062..5601655(+)
Located in intron of:ENSOGAG00000004472
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DUS4L
Ensembl ID:ENSOGAG00000013113
Aliases:None
Description:dihydrouridine synthase 4-like (S. cerevisiae) [Source:HGNC Symbol;Acc:21517]


Retrocopy-Parental alignment summary:






>retro_ogar_1578
TGGGCAATGGCAGAAGGTTATGGGGCTTGCTTAATAAACAAGCCAGAGCTTGTTCAAGATATGATGTAACAAGTAAGAAA
TCAAGTGGGAAACCCTAGATTTTCAGTTTCTATTAAAATAAGGATCCATGATGACCTTTCAAGAACTGTAGATGTTTGTC
GAAAAGCTGAAGCTATAGGAGTTTCCTGGATCACAGTTCATGGAAGAACTACTGAAGAAAGACATCAGCCAGTGCACTAT
GATGCCATTAAAATAATTAAGGAGAATATGTCTATACTTGTAATTGCTAATGGAGACATCAGAAGCTTAAAAGAAGCAAA
AAATGTGTGGCAGAATACTGGGACAGATGGTGTGATGGTTGCAAGAGGATTCTTAGCAAACCCGGCCATGTTTGCTGGAT
TTGAGGAAACCCCACTGAAGTGCATCTGGGACTGGGCTGGCATTGCTCTGAACTTGGAACTCCTTACATGTGTTTCCATC
AACATTTAATGTACATGATGGAAAAGATAACTTCTAGGCAGGAAAAAAGAGTATTTAATGCTCTGTCAAGCACATCAGCA
GTCTTAGATTACCTTACAGACCATTATGGCATT

ORF - retro_ogar_1578 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.97 %
Parental protein coverage: 61.49 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalWAMAEGYGACLINKPELVQDMVKQVRNQVGNPRFSVSIKIRIHDDLSRTVDLCRKAEATGVSWITVHGRT
WAMAEGYGACLINKPELVQDM..QVRNQVGNPRFSVSIKIRIHDDLSRTVD.CRKAEA.GVSWITVHGRT
RetrocopyWAMAEGYGACLINKPELVQDMM*QVRNQVGNPRFSVSIKIRIHDDLSRTVDVCRKAEAIGVSWITVHGRT
ParentalTEERHQPVHYDAIKIIKENMSIPVIANGDIRSLKEAENVWQNTGTDGVMVARGLLANPAMFAGFEETPLK
TEERHQPVHYDAIKIIKENMSI.VIANGDIRSLKEA.NVWQNTGTDGVMVARG.LANPAMFAGFEETPLK
RetrocopyTEERHQPVHYDAIKIIKENMSILVIANGDIRSLKEAKNVWQNTGTDGVMVARGFLANPAMFAGFEETPLK
ParentalCIWDWVDIAL-ELGTPYMCFHQHLMYMMEKITSRQEKRVFNALSSTSAVLDYLTDHYGI
CIWDW..IAL.ELGTPYMCFHQHLMYMMEKITSRQEKRVFNALSSTSAVLDYLTDHYGI
RetrocopyCIWDWAGIAL<ELGTPYMCFHQHLMYMMEKITSRQEKRVFNALSSTSAVLDYLTDHYGI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide