RetrogeneDB ID:

retro_ogar_1467

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873548.1:18152208..18152826(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000002543
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_1467
ATGACTCAGTGGGCACGCATTACTACCCCACATAATAAGAGACCCTTGTCTGTAACATCATGGAGGACGTGAAGAAGCAG
TCCTTTGAGGGAACAAGCCAAAAACTACGAAAGCGCAAACAAGTTGGAACCAATAGACTATCCCTTAAAAATGATGCACC
CCAAGCAAAACATAAAAAGAACAAAAAGAAAAAAGAATACTGAAATGATGATGTGAATGGATTCATGGAATACCTAAGAC
AGAACTCACAGATGATTCACAATGGGAAGAGTATAGCATCAGACATTCAGGAAGTAAGGGAAGAAATTACAGTTGCTTTA
AAGAAAGACAATCAATGGGAAGGAAGACAATTAAAAAAGCCAAGCAGCAAAGAAAAATGCAATGACATGTTTCCATTGTA
GAAAACCTGGTCATGAAATTGCAGATTGTCCACCTGACCTTGCAAATCAAGATATGTGCACTGGAATATGTTACTGGTGT
GGATCCACAGAGCAGGAAATAACCAAGTGTAAGGCTAAAGTAGACCCAGCTATTGGGAAATTTCCTTTTGCAAAATTTTT
TGTTCATGGGGATATGGGACACCTGTCTAGATCTTGTCCTGATAATCCCAAAGGACTG

ORF - retro_ogar_1467 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.48 %
Parental protein coverage: 76.01 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMTRWARVTTTRSKRPLSATSW-EDMKKQSFEGTSQNLPKHKHIGTSRLSLKNDAPQAKQKKNKKKKEYLN
MT.WAR.TT...KRPLS.TSW.ED.KKQSFEGTSQ.L.K.K..GT.RLSLKNDAPQ..........EY.N
RetrocopyMTQWARITTPHNKRPLSVTSW<EDVKKQSFEGTSQKLRKRKQVGTNRLSLKNDAPQXXXXXXXXXXEY*N
ParentalEDVNGFMDYLRQNSQMVHNGEIIASDVQEVREEIAVALKKDSRREGRRLKR-QAAKKNAMVCFHCRKPGH
.DVNGFM.YLRQNSQM.HNG..IASD.QEVREEI.VALKKD...EGR.LK..QAAKKNAM.CFHCRKPGH
RetrocopyDDVNGFMEYLRQNSQMIHNGKSIASDIQEVREEITVALKKDNQWEGRQLKK>QAAKKNAMTCFHCRKPGH
ParentalGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPAFGEFPFAKCFVCGEMGHLSRSCPDNPKGL
.IADCP..L.NQDM.TGICY.CGSTE.EITKCKAKVDPA.G.FPFAK.FV.G.MGHLSRSCPDNPKGL
RetrocopyEIADCPPDLANQDMCTGICYWCGSTEQEITKCKAKVDPAIGKFPFAKFFVHGDMGHLSRSCPDNPKGL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide