RetrogeneDB ID: retro_ogar_141

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: AAQR03195822.1:596..1796(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000026962
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000010036
• Aliases: None
• Description: None

Sequence

>retro_ogar_141
ATGCCTTATGTGGATCGTCAGAATCGCATTTGTGGTTTCCTAGACATTGAAGAAAATGAAAACAGTGGGAAATTTCTTCG
AAGGTACTTCATACTGGATACCAGAGAAGACAGTTTTGTGTGGTACATGGATAATCCACAGAACCTACCTTCTGGATCAT
CACGTGTTGGAGCCATTAAGCTTACCTACATTTCAAAGGTTAGCGATGCTACTAAGCTAAGGCCAAAGGCTGAGTTCTGT
TTTGTTATGAATGCAGGAATGAGGAAGTACTTCCTACAAGCCAACGATCAGCAGGACCTTGTAGAATGGGTAAATGTGCT
GAACAAAGCTATAAAAATTACAGTACCAAAGCAGTCAGACTCACAACCTAATTCTGATAACCTAAGTCGCCAAGGTGATT
GTGGGAAGAAGCAGGTATCTTACAGAACTGATATTGTTGGAGGTGTACCCATCATTACTCCAACTCGGAAAGAAGAAGTA
AACGAATGTGGTGAAAGTATTGACAGAAACAATTTGAAACGGTCGCAAAGCCACCTCCCTTACTTTACTCCTAAACCACC
TCCAGATAGTGCAGTTATCAAAGCTGGATACTGTGTAAAGCAAGGAGCAGTGATGAAAAACTGGAAGAGAAGATATTTTC
AATTGGATGAAAACACAATAGGCTACTTCAAATCCGAACTGGAAAAGGAACCTCTCCGTGTAATACCACTTAAAGAGGTT
CATAAAGTCCAGGAATGTAAGCAAAGTGACATAATGATGAGGGACAACCTTTTTGAAATTGTAACAACGTCTCGAACTTT
CTATGTGCAGGCTGATAGCCCTGAGGAGATGCACAGTTGGATTAAAGCCGTCTCGGGCGCCATTGTGGCACAGCGGGGAC
CGGGCCGGTCAGCCCCTTCTGAGCATTCAGAGTCCAGGCACGCTTTCCGTCCTTCCAGCGCAGCCGCCGCCTCACATTCC
ACAGCCACTCACAGCAGCTCTTTGGTCTCAAGCTTTACCATGGAGAAGCGAGGATTTTACGAATCTCTTGCCAAGGTCAA
GCCAGGGAACTTCAAGGTCCAGACTGTCTCTCCAAGAGAACCAGCTTCCAAAGTGACTGAACAAGCTCTGCTAAAACCTC
AAAGTAAAAATGGCCCTCAGGAAAAAGATGGTGACCCAGTGGACTTGGATGACGCAAGCCTTCCCGTCAGTGACGTGTGA

Alignment

ORF - retro_ogar_141 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98. %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTREDSFVWYMDNPQNLPSGSSRVGAIKLTYISKVSDA
          MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTREDSFVWYMDNPQNLPSGSSRVGAIKLTYISKVSDA
Retrocopy MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTREDSFVWYMDNPQNLPSGSSRVGAIKLTYISKVSDA

Parental  TKLRPKAEFCFVMNAGMRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPNSDNLSRQSDCGKKQVS
          TKLRPKAEFCFVMNAGMRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPNSDNLSRQ.DCGKKQVS
Retrocopy TKLRPKAEFCFVMNAGMRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPNSDNLSRQGDCGKKQVS

Parental  YRTDIVGGVPIITPTQKEEVNECGESIDRNNLKRSQSHLPYFTPKPPPDSAVIKAGYCVKQGAVMKNWKR
          YRTDIVGGVPIITPT.KEEVNECGESIDRNNLKRSQSHLPYFTPKPPPDSAVIKAGYCVKQGAVMKNWKR
Retrocopy YRTDIVGGVPIITPTRKEEVNECGESIDRNNLKRSQSHLPYFTPKPPPDSAVIKAGYCVKQGAVMKNWKR

Parental  RYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSNSDIMMRDNLFEIVTTSRTFYVQADSPEEMH
          RYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQ..SDIMMRDNLFEIVTTSRTFYVQADSPEEMH
Retrocopy RYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQ--SDIMMRDNLFEIVTTSRTFYVQADSPEEMH

Parental  SWIKAVSGAIVAQRGPGRSASSEHSESRHAFRPSSAAATSHSTATRSNSLVSSFTMEKRGFYESLAKVKP
          SWIKAVSGAIVAQRGPGRSA.SEHSESRHAFRPSSAAA.SHSTAT.S.SLVSSFTMEKRGFYESLAKVKP
Retrocopy SWIKAVSGAIVAQRGPGRSAPSEHSESRHAFRPSSAAAASHSTATHSSSLVSSFTMEKRGFYESLAKVKP

Parental  GNFKVQTVSPREPASKVTEQALLKPQSKNGPQEKDGDPVDLDDASLPVSDV
          GNFKVQTVSPREPASKVTEQALLKPQSKNGPQEKDGDPVDLDDASLPVSDV
Retrocopy GNFKVQTVSPREPASKVTEQALLKPQSKNGPQEKDGDPVDLDDASLPVSDV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_141 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000001251	1 retrocopy	retro_cjac_947,
Otolemur garnettii	ENSOGAG00000010036	1 retrocopy	retro_ogar_141 ,
Sus scrofa	ENSSSCG00000010702	1 retrocopy	retro_sscr_416,
Tarsius syrichta	ENSTSYG00000004811	1 retrocopy	retro_tsyr_1190,