RetrogeneDB ID: retro_ogar_139

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873633.1:5338194..5339574(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000032292
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000015178
• Aliases: None
• Description: None

Sequence

>retro_ogar_139
CTACGCTCGGCCGCCGGGATGACTGCTGGGTGGTGCTGTACGCTTGCAGGCTGCTCCCTGTGCTGCTGCTACTGCTGCCC
CAAGATCCGACAGTCCCGGAGCACACGCTGCATGTACGCCTTCTACTTCATCCTGGTCGTAAGCCTCTGTTGCATCATGA
TGTCCAAAACCGTGGCTAACGAGATGAGAGAGCAGATTCCTTTTTTTGAAGATATGTGTGAAGACACTAAGGCTGGTGAC
ACCTGCGGGAATCTGGCGGGCTATTCTGCAGTGTATAGAGTCTGTTTTGGAATGGCTTGTTTCTTCTTCATCTTCTGTCT
ACTGACCTTGAACATCAGCGACAGCAAAAGTTGTAGGGCTCAGATTCACAATGGGTTTTGGTTTTCTAAATTCCTGCTAT
TGGTGGCCCTGTGCTCAGGAGCTTTCTTCATCTCAGATCAGGAGACCTTTCTGAACACCTGGCGCTATGTGGGAGCCGTG
GGAGGCTTTCTCTTTATATGCATTCAGCTCTTCCTGATCGTGCAATTCACACGTGAGTGGAACGAGAAATGGACTGCAGG
CGCAGCCGGTAACAAGCTGTGGTACGCCGCTCTGGCCCTGGCGACCCTCCTCATGTATTCCATTGCTGCTGCAGGCTTGA
TTTTGATGGCAATTTTTTATACAGAAGAAGTCGGCTGCCTGGAAAACAAAATTCTCCTGGGGATCAATGGAGGCCTGTGT
CTGCTTATCGCAATAGTAGCCATCTCACCCTCGGTCCAAGAGCGACAGCCGCACTCGGGGCTCCTGCAGTCGGGGCTCAT
AAGCTGTTATGTCACCTACCTCACCTTCTCAGCTCTGACCAGCAAACCGGTAGACATAGTTCTAGATGAACACAGGAGGA
ATGTTACCATCTGTGTGCCCAACTTTGGTCAAGACCTAGACAGAGATGAAGACTTGGACACCGGACTGGGTATTTTCCTC
TTGCTTGGATGCATCTTGTATTCCTGTTTGACATCAACAAGAAGATCAAGTTCTGACGCTCTGCAGGAGCGATATGCAGC
CGCTGAACTGGAAGGAGCTCGGTGTTGTTTTTGCTTCGGTCCAGATGGAGAGGACACTGAAGACGAGCAGCAGGTAAAGG
ACAGATTAAGGATCATTTATGACGAGAAGAGAGGCACCGTCTATAACTATTCCTACTTCCACTTCATGTTCTTCTTGGCT
TCCCTCTACGTGATGATGACCATCACCAGCTGGTTCAACTATGAAAGCGCGTACCTGGAAGCCTTCTTCAACGGGAGCTG
GTCCATCTTCTGGGTCAAGATGACCTCCTGCTGGATGTGTGTGCTGCTGTACCTGGGGACACTGGTCACCCCTCTGTGCC
GCCCTTCTCCACATTTCTCT

Alignment

ORF - retro_ogar_139 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.66 %
• Parental protein coverage: 99.13 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RCCAGQLA-CCCGTAGCSLCCD-CCPKIRQSRSTRCMYALYFILVVGLCCIMMSKTVAKEMREHIPFFED
          R..AG..A..CC..AGCSLCC..CCPKIRQSRSTRCMYA.YFILVV.LCCIMMSKTVA.EMRE.IPFFED
Retrocopy RSAAGMTAGWCCTLAGCSLCCCYCCPKIRQSRSTRCMYAFYFILVVSLCCIMMSKTVANEMREQIPFFED

Parental  MCKGIKAGDSCENLVGYSAVYRVCFGMACFFFIFCLLTLKISNSKSCRAQIHNGFWFFKLLLLAALCSGA
          MC...KAGD.C.NL.GYSAVYRVCFGMACFFFIFCLLTL.IS.SKSCRAQIHNGFWF.K.LLL.ALCSGA
Retrocopy MCEDTKAGDTCGNLAGYSAVYRVCFGMACFFFIFCLLTLNISDSKSCRAQIHNGFWFSKFLLLVALCSGA

Parental  FFIPDQETFLNAWLYVGAVGGFLFIGIQLFLLVEFAHKWNKNWTAGTASNKLWYASLALATLIMYSIAAA
          FFI.DQETFLN.W.YVGAVGGFLFI.IQLFL.V.F...WN..WTAG.A.NKLWYA.LALATL.MYSIAAA
Retrocopy FFISDQETFLNTWRYVGAVGGFLFICIQLFLIVQFTREWNEKWTAGAAGNKLWYAALALATLLMYSIAAA

Parental  GLISMAIFYTQKVGCLENKILLGINGGLCLLISIVAISPSVLERQPHSGLLQSGLISCYVTYLTFSALTS
          GLI.MAIFYT..VGCLENKILLGINGGLCLLI.IVAISPSV.ERQPHSGLLQSGLISCYVTYLTFSALTS
Retrocopy GLILMAIFYTEEVGCLENKILLGINGGLCLLIAIVAISPSVQERQPHSGLLQSGLISCYVTYLTFSALTS

Parental  KPVDLVLDEHGKNVTICVPNFGQDLYRDENLVTGLGTFLLLGCILYSCLTSTTRSSSDALQGRCADPELE
          KPVD.VLDEH..NVTICVPNFGQDL.RDE.L.TGLG.FLLLGCILYSCLTST.RSSSDALQ.R.A..ELE
Retrocopy KPVDIVLDEHRRNVTICVPNFGQDLDRDEDLDTGLGIFLLLGCILYSCLTSTRRSSSDALQERYAAAELE

Parental  VARCCFCFGPDGEDTDDEQQAKDGPRVIYDEKKGTVYNYSYFHFMFFLASLYVMVTITSWFNYESAHLEA
          .ARCCFCFGPDGEDT.DEQQ.KD..R.IYDEK.GTVYNYSYFHFMFFLASLYVM.TITSWFNYESA.LEA
Retrocopy GARCCFCFGPDGEDTEDEQQVKDRLRIIYDEKRGTVYNYSYFHFMFFLASLYVMMTITSWFNYESAYLEA

Parental  FFSGNRSIFWVKMASCWICVLLYLGTLLIPLCRPAPHYS
          FF.G..SIFWVKM.SCW.CVLLYLGTL..PLCRP.PH.S
Retrocopy FFNGSWSIFWVKMTSCWMCVLLYLGTLVTPLCRPSPHFS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_139 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000015178	1 retrocopy	retro_ogar_139 ,