RetrogeneDB ID:

retro_ogar_1384

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873544.1:13606079..13606653(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:HNRNPA2B1
Ensembl ID:ENSOGAG00000015353
Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033]


Retrocopy-Parental alignment summary:






>retro_ogar_1384
GTGACTGTGAAGAAGCCGTCTGTTGGTGGAGTTAAAGAAGATACGGAGGAGCTTCACCTTAGCAATTTACTCGAGGAATA
TGGAAGAATTGATGCCATTGAGATAGTTACTGGTAGGCAGTCTGGAAAGAAAAGAGGCTTTGGCTTTGTTACTTTTGATG
ACCATGATCCTGTGGATAAAACCATATTGCTGAAATTCCACACCAGCAATGGTCATAAGGCAGAAGGAGGCAAGGCTTTG
TCTAGATAAGAAAGGCAGGAAGTTCAAAGTTCCAGGAGTGGAAGAGGTTGTTTTGGGAATTCACATGGTGGTGGAAATTT
GGGGCCAGGACGAGGAAATACAGTAACTTTAGAGGAAAATCTGACGGAGGTGAGAGTGGGTGTGGATTTGGGGATGGCCA
AATGGGTATGGGGGAGGACCTGGAAGTGACCATTTTGGAGGTAGCCCTGGGTATGGAGGAAGAAGAGAAAGATATGGTGA
TGAAGGACCTGGATACAGCAGTCTGGGTGGGGACCATAGAGGTGGTTATAACCAGCAACATTCTAACTATGGTCCAATGA
GGAGTGGAAACTTT

ORF - retro_ogar_1384 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 65.66 %
Parental protein coverage: 54.39 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN
VTVKK..VGG.KEDTEE.HL....EEYG.ID.IEI.T.RQSGKKRGFGFVTFDDHDPVDK..L.K.HT.N
RetrocopyVTVKKPSVGGVKEDTEELHLSNLLEEYGRIDAIEIVTGRQSGKKRGFGFVTFDDHDPVDKTILLKFHTSN
ParentalGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSR-GGGGNFGPGPG-SNFRGGSDGYGSGRGFGDGY-N
GH.AE..KALSR.E.QEVQSSRS...G...FG.S..GG....G.G...SNFRG.SDG..SG.GFGDG..N
RetrocopyGHKAEGGKALSR*ERQEVQSSRS---GRGCFGNSHGGGNLGPGRGNT<SNFRGKSDGGESGCGFGDGQ<N
ParentalGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYG---SGNY
GYGGGPG...FGGSPGYGG.R..YG..GPGY...GG...GGY.N....NYG...SGN.
RetrocopyGYGGGPGSDHFGGSPGYGGRRERYGDEGPGYSSLGGDHRGGY-NQQHSNYGPMRSGNF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide