RetrogeneDB ID:

retro_ogar_1379

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873544.1:9484856..9485868(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:EI24
Ensembl ID:ENSOGAG00000001838
Aliases:None
Description:etoposide induced 2.4 [Source:HGNC Symbol;Acc:13276]


Retrocopy-Parental alignment summary:






>retro_ogar_1379
ATGGCTGACAGTGTCAAAACATTTCTCTAGGACCTTGCCAGGGGAATCAAAGATTCCATATGGGGGTATTTGCACCATCT
TAAAGTTAGATGCTAGAATCCAGCAAAAGAGAGAGTGGAGCAGCACCAAAGAAGGGTAAGCAGTATCCTGGCACAGAGGG
GAGCCCAGAGCACAGAGCAGGAGCAAGAGAGTGAGCCACATATTGTTAATTGAATTTTCCAGGGTTGTGCTTAGAATGGT
GGAGTATTCTGGTGTAGTCTCCTCTTGTTTTATTGAATGTTTATTCCTGGGCTTTAGTATGTAACAGCCCTAATTATTGG
TGATCTATCACCTGCATGGAGTTTTTTGGTCCTGGCCGGAATTCTTCCTCACATCAATTTTTAGTGCTCTCTGGGTGCTC
CCCCTGTTTGTCATGAATACCATTTGGTTTCAGGATATAGCTGACCTGGCATTTGAGGTATCACGGAGGAGGCCTCATCC
ATTCTCTGGTGTCAGTAGAATAATTGCTGACATTCTTTTCAACTTTCTGTTGCAGGCTCTTTTTCTTATCCAGGGAATGT
TCGTGAGCCTCTTTCCTATCCATCTTGTTGGTCAGCTGGTTAGTCTCCTTCATATGTCCCTTCTGTACTCACTGTATTGC
TTCACATATCATTGGCTCAATAAAGGAATTGAAATGCACCAACAGTTGTCACACATAGAAAGGAACTGGCCTTACTACTT
TGGGTTTAGTTTGCTGTTGGCTTTTCTCATGGCAATATAGTCCTCATACATTGTCAGTGGCTGCCTCTTCTCTATCCTCT
TTTCTTTATTCATTATCAGCGCCAATGAAGCAAAGACCCCTGGAAAAGCATACCTCTTCCAGTTACAGCTCTTCTCCTTG
GTGGTCTTCTTAAGCAACTGACTCTTTCACAAGACAGGGTACCTGCCTTCTGCCTTGAGCAGCTCAACTTCTACAGAGAT
GTTCCCTTTGCCACATCCATCTCCTGCCAAACCGAAAGCTGCTGCCGGCCAC

ORF - retro_ogar_1379 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.14 %
Parental protein coverage: 100. %
Number of stop codons detected: 7
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMADSVKTFLQDLARGIKDSIWG-ICTISKLDARIQQKRE-EQRRRRASS-VLAQRRAQSTERKQESEPRI
MADSVKTFL.DLARGIKDSIWG.ICTI.KLDARIQQKRE......R..S..LAQR.AQSTE..QESEP.I
RetrocopyMADSVKTFL*DLARGIKDSIWG>ICTILKLDARIQQKRE<VEQHQRRVSSILAQRGAQSTEQEQESEPHI
ParentalVSRIFQCCAWNGGVFWCSLLLFYRMFIPGLQYVTALIIGDPS-LHGVFWSWLEFFLTSIFSALWVLPLFV
V..IFQ.CA.NGGVFWCSLLLFY.MFIPGL.YVTALIIGD.S.LHGVFWSW.EFFLTSIFSALWVLPLFV
RetrocopyVN*IFQGCA*NGGVFWCSLLLFY*MFIPGL*YVTALIIGDLS>LHGVFWSWPEFFLTSIFSALWVLPLFV
ParentalLSKVVNAIWFQDIADLAFEVSGRRPHPFPSVSKIIADMLFNLLLQALFLIQGMFVSLFPIHLVGQLVSLL
.....N.IWFQDIADLAFEVS.RRPHPF..VS.IIAD.LFN.LLQALFLIQGMFVSLFPIHLVGQLVSLL
RetrocopyM----NTIWFQDIADLAFEVSRRRPHPFSGVSRIIADILFNFLLQALFLIQGMFVSLFPIHLVGQLVSLL