RetrogeneDB ID:

retro_ogar_1285

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873541.1:3494185..3494593(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000025933
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_1285
ATGGCTCATACAAAGCAGACGGCCCACAAATCCACCGGTGGTAAAGCACCCAGGAAGCAGCTGGCTGCAAAAGCCGCTCA
CAAGAGCGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGCTACAGGCCCGGTGCTGTCGCACTCCGTGAAATAAGAT
GTTATCATTAAGTCCACTGAACTTCTGATCGCAAACTTCCTTTCCAGAGTCTGGTGAGAGAGATTGCTCAGGACTTTAAG
ACAGATCTGCACTTCCAGAGCGCAGCTATTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGA
CACCAACCTGTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGACATCCAGCTAGCACGCTGCATACGTGGAG
AACGTGCT

ORF - retro_ogar_1285 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.3 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQ-KSTELLI-RKLPF
MA.TKQTA.KSTGGKAPRKQLA.KAA.KSAPSTGGVKKPHRYRPG.VALREIR.Y..KSTELLI.RKLPF
RetrocopyMAHTKQTAHKSTGGKAPRKQLAAKAAHKSAPSTGGVKKPHRYRPGAVALREIRCYH>KSTELLI<RKLPF
ParentalQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Q.LVREIAQDFKTDL.FQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR.IRGERA
RetrocopyQSLVREIAQDFKTDLHFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARCIRGERA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.