RetrogeneDB ID:

retro_ogar_1237

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873540.1:7995971..7996383(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000030711
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_1237
GCCGCCACTGCCAAGAAGTAGAATATACGTGTAGAAGACTGCGAGCCTTACCCAGACGATGGCATGGGGTATGGTGATTA
TCCAAACTCCCTAACCGCTCACAGCATGAGAGGGATCCATGGTATCACTGGGACCACTCAGACCTGGGTTGAACTGGGGT
GAACCGATACACTGGGACCCAGACATGTATGTCAGGAACCGTGTGGACACGTCACCCAAACCTGTTTCTTGGAATGTCAT
GTGTAAGCAACTCTTTGGCTTCGTGGCCTTCATGATTTTCATGTTCTGAGTTGGGGAGATGTACCCCACCTACGAGCCTG
TGGGGCCAAAGCAGTATCCTTATAATAATTTACACCTGGAGTGAGGGGGCGATCCTACCAAAGAGCCTGAGCCGGTGGTT
CACTATGAGATC

ORF - retro_ogar_1237 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.57 %
Parental protein coverage: 73.02 %
Number of stop codons detected: 3
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalAAAAKKYNMRVEDYEPYPDDGMGYGDYP-KLPNRSQHERDPWYDWDHSDLR-LNWGEPIHWDLDMYIRNR
AA.AKK.N.RVED.EPYPDDGMGYGDYP.KLPNRSQHERDPWY.WDHSDL..LNWGEPIHWD.DMY.RNR
RetrocopyAATAKK*NIRVEDCEPYPDDGMGYGDYP<KLPNRSQHERDPWYHWDHSDLG<LNWGEPIHWDPDMYVRNR
ParentalVDTSPTPVSWNVMCKQLFGFVAFMVFMFWVGEMYPTYQPVGPKQYPYNNLYLERGGDPTKEPEPVVHYEI
VDTSP.PVSWNVMCKQLFGFVAFM.FMF.VGEMYPTY.PVGPKQYPYNNL.LE.GGDPTKEPEPVVHYEI
RetrocopyVDTSPKPVSWNVMCKQLFGFVAFMIFMF*VGEMYPTYEPVGPKQYPYNNLHLE*GGDPTKEPEPVVHYEI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.