RetrogeneDB ID: retro_ogar_1157

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873537.1:12215266..12215526(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TIMM13
• Ensembl ID: ENSOGAG00000013643
• Aliases: None
• Description: translocase of inner mitochondrial membrane 13 homolog (yeast) [Source:HGNC Symbol;Acc:11816]

Sequence

>retro_ogar_1157
GAGGGCAGCTTCGGTGTAGATTTCAGGAGCTTCAGCAGTGGGAAGGTGGGCCCGGGATCATCACCGAGCAGGTGGAGGTG
CAGGTCATAGCGCAGGCGCTGCTGCAGAGAATAACGGTCAGGGGTTTCGGGAGGGGTATCAGGAAGCCCGGGGCTCCCCC
GACAACTCAGCAGTGCACGGCCACGTGCACGGACTGCTACCTGGACGCCTGGAACACCGTGTCCCGTGTCTGCAACTGGC
GGCTGCAGAGGGAGCTAGCC

Alignment

ORF - retro_ogar_1157 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.84 %
• Parental protein coverage: 96.84 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EGSFGSDFGGSGSGKLDPG-LIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCIAMCM
          EGSFG.DF....SGK..PG..I.EQV.VQ.....AQ.LLQR.T...F...I.KPG.......Q.C.A.C.
Retrocopy EGSFGVDFRSFSSGKVGPG<IITEQVEVQVI---AQALLQRITVRGFGRGIRKPGAP--PTTQQCTATCT

Parental  DRYMDAWNTVSRAYNSRLQRERA
          D.Y.DAWNTVSR..N.RLQRE.A
Retrocopy DCYLDAWNTVSRVCNWRLQRELA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1157 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000016259	2 retrocopies	retro_etel_1313, retro_etel_49,
Otolemur garnettii	ENSOGAG00000013643	1 retrocopy	retro_ogar_1157 ,
Pteropus vampyrus	ENSPVAG00000000073	1 retrocopy	retro_pvam_156,