RetrogeneDB ID: retro_ogar_105

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873565.1:13409958..13411467(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000027676
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000029638
• Aliases: None
• Description: None

Sequence

>retro_ogar_105
ATGGGGACTGAGAACCAGGAGGTGATTCCCAAGGAAGAAGTTTCTGAAGAATCTGAGTCACATGAGTCAATATTAGAAAA
ATTGCCAAAAGTGGTTTACCAAAGTCAGGAGTTTGGAGCGGCATATGAAGAAGATATATCAGAGGAACATTCAAGAGAAT
ACACAGAAGAGATTATAGAGCAGATGTCTCCTCAGGAAAGAGACTTTGCATCAGGGTTGATTATTTTTAAGAAATCACCT
TTAAGTGAGAAAGATCAGGAGAATAATGAGAGTGAGAGAGGCAGTCCCAGCCCAAATCCAGTTACACATCAGGGAGATAC
TATAGCAGAGGGGGTTAGTAAGTTTCCTACCTCAGGCCAAAACTTCATAGAGAATTTAGAACTTAACAAAACACAGAGAT
GTTCTGTGGGAGAAAAGCCTCATACATGTAAAGAATGTGGGAAAGCCTTTAATCAGAACTCACATCTCATCCAGCATATG
AGAGTACACAGTGGAGAAAAACCTTTTGAATGCAAAGAATGTGGAAAGACATTTGGAACTAATTCAAGCCTTCGGAGGCA
CCTTAGAATTCATGCTGGAGAGAAACCCTTTGCGTGTAGTGAATGTGGGAAGGCCTTTATTCAGAGTTCACATCTTATCC
ACCATCACAGAATTCACACTGGAGAGAGACCCTATAAGTGTGAAGAATGTGGTAAAGCCTTCAGCCAGAATTCAGCCCTT
ATTCTCCACCAGAGAATCCACACTGGAGAGAAACCTTATGAATGTAATGAATGTGGGAAGACCTTTAGGGTTAGCTCACA
GCTTATTCAGCATCAGAGAATTCATACTGAAGAAAGATATCATGAATGCAATGAATGTGGTAAAGCCTTCAAGCATAGCT
CGGGCCTTATTAGACACCAGAAAATTCATACTGGAGAAAAACCATATCTGTGTAATGAATGTGGGAAAGGCTTTGGTCAG
AGTTCTGAGCTTATCCGGCATCAAAGAATTCATACAGGGGACAAACCCTATGAGTGTAATGAATGTGGAAAAACTTTTGG
GCAGAACTCAGAGATTATTCGTCATATTCGAATTCATACTGGTGAGAAGCCCTATGTATGTAAGGAATGTGGGAAGGCCT
TCAGGGGGAACTCCGAACTTCTTAGGCATGAGAGAATTCACACTGGAGAGAAACCTTATGAGTGCTTTGAGTGTGGAAAG
GCTTTTAGGCGGACCTCTCACCTTATTGTCCACCAGAGAATTCATACTGGAGAGAAGCCCCATCAATGTAACGAGTGTGC
AAGAACGTTTTGGGATAATTCTGAGCTGCTTCTCCACCAGAAAATTCACGTTGGAGAGAAACCTTATGAATGTAATGAAT
GTGAGAAAACATTTAGCCAGCATTCCCAGCTTATCATACATCAGAGAATTCACACTGGAGAGAAGCCTTATGAGTGCCAG
GAATGTCAGAAGACCTTTAGTCGTAGCTCTCACCTCCTTCGACATCAAAGTGTTCATTGTATGGAATGA

Alignment

ORF - retro_ogar_105 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.48 %
• Parental protein coverage: 51.43 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SHQDIHNKVKR--YHCKECGKAFSQNTGLILHQRIHTGEKPYQCNQCGKAFSQSAGLILHQRIHSGERPY
          SH..I..K.....Y...E.G.A.........H.R..T.E...Q.......F....GLI........E...
Retrocopy SHESILEKLPKVVYQSQEFGAAYEEDISEE-HSREYTEEIIEQMSPQERDFA--SGLIIFKKSPLSEKDQ

Parental  ECNECGKAFSHSSHLIGHQRIHTGEKPYECDECGKTFRRSSHLIGHQRSHTGEKPYKCNECGRAFSQKSG
          E.NE.....S.S.....HQ.....E........G..F.....L...QR...GEKP..C.ECG.AF.Q.S.
Retrocopy ENNESERG-SPSPNPVTHQGDTIAEGVSKFPTSGQNFIENLELNKTQRCSVGEKPHTCKECGKAFNQNSH

Parental  LIEHQRIHTGERPYKCKECGKAFNGNTGLIQHLRIHTGEKPYQCNECGKAFIQRSSLIRHQRIHTGEKPY
          LI.H.R.H.GE.P..CKECGK.F..N..L..HLRIH.GEKP..C.ECGKAFIQ.S.LI.H.RIHTGE.PY
Retrocopy LIQHMRVHSGEKPFECKECGKTFGTNSSLRRHLRIHAGEKPFACSECGKAFIQSSHLIHHHRIHTGERPY

Parental  ECDHCGKAFSVRSTLTVHERIHNGEKPYECNECGKAFSVSSDLIKHQRIHTGEKPYECDECGKVFSMSSA
          .C..CGKAFS..S.L..H.RIH.GEKPYECNECGK.F.VSS.LI.HQRIHT.E...EC.ECGK.F..SS.
Retrocopy KCEECGKAFSQNSALILHQRIHTGEKPYECNECGKTFRVSSQLIQHQRIHTEERYHECNECGKAFKHSSG

Parental  LIKHQRIHTGEKPYECKECGKAFYVNSALINHKRIHSGEKPYECGECGKAFSQISTLIHHQRIHTGEKPY
          LI.HQ.IHTGEKPY.C.ECGK.F...S.LI.H.RIH.G.KPYEC.ECGK.F.Q.S..I.H.RIHTGEKPY
Retrocopy LIRHQKIHTGEKPYLCNECGKGFGQSSELIRHQRIHTGDKPYECNECGKTFGQNSEIIRHIRIHTGEKPY

Parental  ECDECGKAFRGSSNLTKHQKIHAKGERHHRCGECGKVFAHSSGLIRHQRIHTGERPYECNDCGKTFSRSC
          .C.ECGKAFRG.S.L..H..IH..GE....C.ECGK.F...S.LI.HQRIHTGE.P..CN.C..TF....
Retrocopy VCKECGKAFRGNSELLRHERIHT-GEKPYECFECGKAFRRTSHLIVHQRIHTGEKPHQCNECARTFWDNS

Parental  GLFNHRRIHNIQKQYHCKDCGKAFSQSAGLIQHQRIHKGEKPYQCSQCSKSYSRSSFLIEHQRSHTGE
          .L..H..IH...K.Y.C..C.K.FSQ...LI.HQRIH.GEKPY.C..C.K..SRSS.L..HQ..H..E
Retrocopy ELLLHQKIHVGEKPYECNECEKTFSQHSQLIIHQRIHTGEKPYECQECQKTFSRSSHLLRHQSVHCME

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_105 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000023794	1 retrocopy	retro_ecab_61,
Macaca mulatta	ENSMMUG00000003688	1 retrocopy	retro_mmul_44,
Otolemur garnettii	ENSOGAG00000005643	1 retrocopy	retro_ogar_19,
Otolemur garnettii	ENSOGAG00000029638	2 retrocopies	retro_ogar_105 , retro_ogar_193,
Pelodiscus sinensis	ENSPSIG00000004688	1 retrocopy	retro_psin_20,
Pelodiscus sinensis	ENSPSIG00000008115	1 retrocopy	retro_psin_11,