RetrogeneDB ID:

retro_ogar_1047

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873534.1:4528589..4528981(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000029251
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:YWHAQ
Ensembl ID:ENSOGAG00000000547
Aliases:None
Description:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide [Source:HGNC Symbol;Acc:12854]


Retrocopy-Parental alignment summary:






>retro_ogar_1047
ATTGGTGAGTACATATTTAACGGCCAGTGCAACCACAGGGTTAAGGTTGTCTATATGAAAATGAAGGGAGATTACTTCCA
GATGCTTGCTGAAGATGCATGTGGTGATGTTCCAAACCAAATGACACATCATTTCCAAGGAGTTTCCCAAGAGGCATTTG
ATACAAACAAGAAAGAGATGATGCCCACATACTCAGTCTGCCTGGGGCTGGCTCTTAATGTTTCTCTATTTTACTACAAG
ATCCTTGATAGCCCAGAGCTTTCCTGCACATTGACTAAAATGTCTTTTAATGAGGCCATCGCAGAACTGGATACACTAAA
TAAGACTAATACAAAGACAGCAGGCTTCTCATGACGTTACTTAGCGACAACCTAATTCTACGGATATCAGAT

ORF - retro_ogar_1047 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 59.09 %
Parental protein coverage: 53.47 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalLDKYLIANATNPESKVFYLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGL
...Y......N...KV.Y.KMKGDYF..LAE.ACGD...Q.....QG..QEAFD..KKEM.PT....LGL
RetrocopyIGEYIFNGQCNHRVKVVYMKMKGDYFQMLAEDACGDVPNQMTHHFQGVSQEAFDTNKKEMMPTYSVCLGL
ParentalALNFSVFYYEILNNPELACTLAKTAFDEAIAELDTLNE-DSYKDSTLIMQLLRDNLTLWTSD
ALN.S.FYY.IL..PEL.CTL.K..F.EAIAELDTLN..D.YKDS.L.M.LL.DNL.L..SD
RetrocopyALNVSLFYYKILDSPELSCTLTKMSFNEAIAELDTLNK<D*YKDSRLLMTLLSDNLILRISD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.