RetrogeneDB ID: retro_ocun_1340

Retrocopy location

• Organism: Rabbit (Oryctolagus cuniculus)
• Coordinates: 7:3968644..3969862(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANO10
• Ensembl ID: ENSOCUG00000008275
• Aliases: None
• Description: anoctamin 10 [Source:HGNC Symbol;Acc:25519]

Sequence

>retro_ocun_1340
ACGGTGATCCTGGAGGTGTGGAAGCGTGGCTGCGCCAGCATGACCTACAGGTGGGGCACTCTGGTCATGAAGAGGCAGTT
TGAGGAGCCCCGGCCGGGATTCCACGGGGTCCTGGGTGTCAACTCTGTCACGGGCAGGGAGGAGCCCCTCTACTCCAGCT
ACAAGAGACAGTTGCGCATTTACCTGGTCTCCCTGCCATTCGTCTGCATCTGTCTCTATTTCTCCCTGTACGTCATGATG
ATTTACTTCGACATGGAGACCTGGGCCTTGGCTCTGCATGACAGCAGCGAGTCGGAGTGGACCAGCGTCTTGCTGTACGT
GCCCAGCATCATCTATGCCATCGTGATCGAGATCATGAACCGCCTCTACCGCTACGCCGCCGAGTTCTTGACTTCCTGGG
AGAGTCACAGATTGGAGTCTGCCTACCAGAATCATCTGGTTCTGAAAGTCTTGGTGTTCAACTTTCTCAATTGCTTCGCT
TCGCTCTTCTACATTGCCTTTGTCCTGAAGGATATGAAGCTTTTGCGACAGAGTTTGGCCACTCTCCTGATCACCTCTCA
GATCCTTAACCAGATTGTGGAATCACTTCTCCCTTATTGGCTGCAAAGGAAGCACGGCGTGCGGGTGAGGAGGAAGGTGC
AGGCTCTCAAGGCAGACGTCGATACCACCCTCTATGAACAAGTCATCCTGGAAAAAGAAATGGGAACTTACTTGGGCACC
TTCAACGATTACTTGGAGCTGTTTCTGCAGTTTGGCTACGTGAGCCTTTTCTCCTGCGTCTACCCACTAGCAGCTGCCTT
TGCTGTGTTAAATAACTTCACGGAAGTCAATTCAGATGCCTTAAAGATGTGCAGGGTCTTCAAACGTCCATTCGCAGAAC
CTTCGGCCAATATCGGCGTATGGCAGTTGGCTTTTGAGACCATGAGTGTTATCTCTGTGGTCACTAACTGTGCTCTGATT
GGAATGTCGCCGCAAGTGAATGCCCTCTTCCCAGAGTCAAAGACGGACCTCATTTTGATTGTGGTGGCAGTGGAGCATGC
CCTCCTGGCTTTGAAGTTCATACTCGCGTTTGCCAAACCTGATAAGCCCCGGCATATCCAGATGAAACTGGCCAGGCTGG
AATTCGAGTCGTTGGAGGCGCTCAAGCAGCAGCAAATGAAGCTCGTGGCCGAGAACCTGAAGGAGGAACCCCGGGAATCT
GGGAAGGAGAAGCCGAGC

Alignment

ORF - retro_ocun_1340 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.01 %
• Parental protein coverage: 61.52 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TVILEVWKRGCASMTYRWGTLVMKRQFEEPRPGFHGVLGVNSVTGREEPLYSSYKRQLRIYLVSLPFVCI
          TVILEVWKRGCASMTYRWGTLVMKRQFEEPRPGFHGVLGVNSVTGREEPLYSSYKRQLRIYLVSLPFVCI
Retrocopy TVILEVWKRGCASMTYRWGTLVMKRQFEEPRPGFHGVLGVNSVTGREEPLYSSYKRQLRIYLVSLPFVCI

Parental  CLYFSLYVMMIYFDMETWALALHDSSESEWTSILLYVPSIIYAIVIEIMNRLYRYAAEFLTSWENHRLES
          CLYFSLYVMMIYFDMETWALALHDSSESEWTS.LLYVPSIIYAIVIEIMNRLYRYAAEFLTSWE.HRLES
Retrocopy CLYFSLYVMMIYFDMETWALALHDSSESEWTSVLLYVPSIIYAIVIEIMNRLYRYAAEFLTSWESHRLES

Parental  AYQNHLVLKVLVFNFLNCFASLFYIAFVLKDMKLLRQSLATLLITSQILNQIVESLLPYWLQRKHGVRVR
          AYQNHLVLKVLVFNFLNCFASLFYIAFVLKDMKLLRQSLATLLITSQILNQIVESLLPYWLQRKHGVRVR
Retrocopy AYQNHLVLKVLVFNFLNCFASLFYIAFVLKDMKLLRQSLATLLITSQILNQIVESLLPYWLQRKHGVRVR

Parental  RKVQALKADVDTTLYEQVILEKEMGTYLGTFDDYLELFLQFGYVSLFSCVYPLAAAFAVLNNFTEVNSDA
          RKVQALKADVDTTLYEQVILEKEMGTYLGTF.DYLELFLQFGYVSLFSCVYPLAAAFAVLNNFTEVNSDA
Retrocopy RKVQALKADVDTTLYEQVILEKEMGTYLGTFNDYLELFLQFGYVSLFSCVYPLAAAFAVLNNFTEVNSDA

Parental  LKMCRVFKRPFAEPSANIGVWQLAFETMSVISVVTNCALIGMSPQVNALFPESKTDLILIVVAVEHALLA
          LKMCRVFKRPFAEPSANIGVWQLAFETMSVISVVTNCALIGMSPQVNALFPESKTDLILIVVAVEHALLA
Retrocopy LKMCRVFKRPFAEPSANIGVWQLAFETMSVISVVTNCALIGMSPQVNALFPESKTDLILIVVAVEHALLA

Parental  LKFILAFAIPDKPRHIQMKLARLEFESLEALKQQQMKLVAENLKEEPRESGKEKPS
          LKFILAFA.PDKPRHIQMKLARLEFESLEALKQQQMKLVAENLKEEPRESGKEKPS
Retrocopy LKFILAFAKPDKPRHIQMKLARLEFESLEALKQQQMKLVAENLKEEPRESGKEKPS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	2.04 RPM	17.77 RPM
SRP017611_kidney	2.43 RPM	28.08 RPM
SRP017611_liver	3.78 RPM	42.01 RPM

ChIP-Seq

Oryctolagus cuniculus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ocun_1340 retrocopy.

TSS

Oryctolagus cuniculus was not studied using FANTOM5 data.

Lab

retro_ocun_1340 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ocun_1340 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Oryctolagus cuniculus	ENSOCUG00000008275	1 retrocopy	retro_ocun_1340 ,