RetrogeneDB ID: retro_oana_95

Retrocopy location

• Organism: Platypus (Ornithorhynchus anatinus)
• Coordinates: Contig83128:713..1965(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOANG00000021754
• Aliases: None
• Description: None

Sequence

>retro_oana_95
AAAAGGTGGGGCCGGGAGCAAAGGTCGGGCCCGCAGAAAAGGTTACTCCAGAAGAAAAAGTTCAGGTTGGGAGCACAGGT
CAGGGAGGGATCAGAGGTTTAGCCGGAGAAAAGATTAGGCGGGGAGCAAAGGTCGGGCCGGGAGCAGAGGTTTGGCCGGG
ACCAGAGGTTTGGCTGGGAGAAAAGGTGGGGCAGGGAGAAAAAGTCGCGCCGGGAGCAAAGGGCGGGCCGGGAACAGAGG
TGTAGCCTGGAGCAGAGGTTTCGACGGGAGAAAAGATCAGGCCGGGAGCAAAGGGCGGGGCGGGGCAGAGGTTTTGCCGG
GAGCAGAAGTTTAGCCGGGAGAGAAGATCAGGCCGGGAGCAAAGGGCGGGCCGGGAGCAGAGGTTTAACCAGGAACAGAG
GTTTAGCAGGGAGAAAAGATCAGGCGAGGAGCAAAGGGCGGGCCGGGAGCAGAGGTTTAGCCGGGAGCAGATGTTTGGCC
GGGAGAAAAGATCAGGACGGGAACAAAGGGAGTGCCGGCGGCAGAGGTTTAACCGGGAGCAGAGGTTTAGCCGGGAGAAA
AGATCAGGACGGGAGCAAAGGGCGGGCCGGGGGAAGAGGTTTAACCGGGAGAAAAGATCCGGTCGGAAGGAAAGGGCGGG
CCGGGGGCAGAGGTCAGGCCGGGAGAAAAGGTCAGGCCGGGAGAAAGGATCAGGCCGGGAGCAAAGGGCGGGCCGGAGGC
AGAGATTTAGCCGGGAGAAAACATCAGGCCGGAAGAAAGGATCAGGCCGGGAGCAAAGGGCGGGCCGGGGGCAGAGGTTT
AGCTGGGAGAAAACATCAGGCCGGAAGAAAAGATCAGGCCGGGAGCAAAGGGCGGTCCGGGGGCAGAGGTTTAACCGGGA
GCAGAGGTTTAGCCGGGAGAAAAGATCAGATCAGGCCAGGAGCAAAGGGCGGGCCGGGGGCAGAGGTTTAGCCAGGAGAA
AAGATCCGGTCGGAAGCAAAGGGCGGGCCGGGGGCAGAGGTTTCACCGGGAGAAAAGATCAGGCCGGGAGCAAAGGGCGG
GGCGGGAGCAGAGGTTTAGCCGGGAGAAAAGATCAGACCGGGAGCAAAGGGCGGGCCGGGGGCAGAGGTTTAACCGGGAG
CAGAGATTTAGCCGGGAGAAGAGATCAGGCCAGGAGCAAAGGGCGGGGCACGGGCAGAGGTTCAACCGGGAGCAGAGGTT
TAGCCGGGAGAAAAGATCAGGCCGGGAGCAGAGGTTTGGCCGGGAGAAAACG

Alignment

ORF - retro_oana_95 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.03 %
• Parental protein coverage: 60.46 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  QKWSGRGQMSGREQR-FSREQRFGREKRSGREQRAD-PPKSRAEEKRSGQEQMAGRGQRFNREQRYSREK
          ..W.GR.Q.SG...R..SR....G.E.RSGR.QR...P.K....E.RSG.EQ..GR.QRF..E.R..REK
Retrocopy KRW-GREQRSGPQKR>YSRRKSSGWEHRSGRDQRFS<PEKRLGGEQRSGREQRFGRDQRFGWEKRWGREK

Parental  RSGREQRAGRGQRFNREQRFSREKRSGQEQWAGRG-QRFNREQRFSREKISAREQRAGRGQRFNREQKFS
          .S.REQRAGR.QR...EQRF.REKRSG.EQ.AGRG.QRF.REQ.FSRE..S.REQRAGR.QRFN.EQ.FS
Retrocopy KSRREQRAGREQRCSLEQRFRREKRSGREQRAGRG<QRFCREQKFSRERRSGREQRAGREQRFNQEQRFS

Parental  REKRSGREQRAGRGQRFKREQRFSREKRSGREQRAGRGQRFNRELRFSREKRSGPEQRAGRGQRFNREQR
          REKRSG.EQRAGR.QRF.REQ.F.REKRSGREQR..R.QRFNRE.RFSREKRSG.EQRAGRG.RFNRE.R
Retrocopy REKRSGEEQRAGREQRFSREQMFGREKRSGREQRECRRQRFNREQRFSREKRSGREQRAGRGKRFNREKR

Parental  FSREKRSGREQ--SRKHRSGQEQSFSREKRSGREQRETR-RKGGAGSKDREQRAGREQRANREQRFSREK
          ..R..R.GR.Q...R..RSG.E....RE.R.GR.QR..R.RK..AG.KD....AG...RA.......R..
Retrocopy SGRKERAGRGQRSGREKRSGREKGSGREQRAGRRQRFSR>RKHQAGRKDQ---AGSKGRAGGRGLAGRKH

Parental  RSGREQRLGRGQRFSQEKRSGWEQRAGQRQ-RFNREQRFSREKRSGREQRAGRGQRFNREQWFSREKRSG
          ..GR....G...R.......G....AG....R...EQR..R..R...E.R.GR.QR..R.Q.F.REKRSG
Retrocopy QAGRKDQAGSKGRSGGRGLTGSRGLAGRKD>RSGQEQRAGRGQRFSQEKRSGRKQRAGRGQRFHREKRSG

Parental  RQQRVGRGQRFSQEKRSGREQRAGRGQRFNREQRFSREKRSGREQRAGRRQRFNREQRLGREQRFSWEKR
          R.QR.GR.QRFS.EKRS.REQRAGRGQRFNREQRFSREKRSG.EQRAG..QRFNREQR..RE.R...E.R
Retrocopy REQRAGREQRFSREKRSDREQRAGRGQRFNREQRFSREKRSGQEQRAGHGQRFNREQRFSREKRSGREQR

Parental  SGREQS
          .GRE..
Retrocopy FGREKT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.19 RPM	0.14 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.09 RPM	0.09 RPM
SRP007412_testis	0.00 RPM	0.00 RPM

ChIP-Seq

Ornithorhynchus anatinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_oana_95 retrocopy.

TSS

Ornithorhynchus anatinus was not studied using FANTOM5 data.

Lab

retro_oana_95 was not experimentally validated.

Homology

Retrocopy orthology:

Ornithorhynchus anatinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Ornithorhynchus anatinus	ENSOANG00000021754	2 retrocopies	retro_oana_70, retro_oana_95 ,