RetrogeneDB ID: retro_oana_31

Retrocopy location

• Organism: Platypus (Ornithorhynchus anatinus)
• Coordinates: Contig139002:285..630(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOANG00000007107
• Aliases: None
• Description: None

Sequence

>retro_oana_31
GTGGAGACAAAAGGCAAAGGAAAATCAGGTTTTTGTTGGGTTTTTTTTTTTAACTCTCACGATGTAACACCTTAATGTCA
TTTTCCTGTGATATATTTTTTTTAATTAGCAAACCCTGGGACATATACGGCCGAAGTTCCCATGCATCTGAATGATAATC
CGGCAAACTATCGAGTGTTACGCTTGACTGGTGCTGTGAAATCACCCAGGTTAACCTTTGACCCTCCGTTTGTTATCCTG
ACTCCCGTTCCTCTGGGTATGAAAACCGGCAGGGATGTCCACATCACTCCACTGAACTATTACAGGTAATGAAGACTTCG
TGAGAATCGGCCACGAAGCCCTTTA

Alignment

ORF - retro_oana_31 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.61 %
• Parental protein coverage: 51.57 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IDHMGKRMKDSTFRFNVNSGSLEPGEENSIIISFCPTNPGTYTAEVPMHLNDNPANYRVLRLTGAVKSPR
          ....GK...........NS....P......I......NPGTYTAEVPMHLNDNPANYRVLRLTGAVKSPR
Retrocopy VETKGKGKSGFCWXXXXNSHDVTP*CHFPVIXXXXLANPGTYTAEVPMHLNDNPANYRVLRLTGAVKSPR

Parental  LSFDPPFVILTPVPLGMKTGRDVYITPLNYYRCSKLQVHIPEVDL
          L.FDPPFVILTPVPLGMKTGRDV.ITPLNYYR...L....P...L
Retrocopy LTFDPPFVILTPVPLGMKTGRDVHITPLNYYR**RLRENRPRSPL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain	0.00 RPM	0.62 RPM
SRP007412_cerebellum	0.00 RPM	0.09 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.71 RPM	4.03 RPM

ChIP-Seq

Ornithorhynchus anatinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_oana_31 retrocopy.

TSS

Ornithorhynchus anatinus was not studied using FANTOM5 data.

Lab

retro_oana_31 was not experimentally validated.

Homology

Retrocopy orthology:

Ornithorhynchus anatinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Ornithorhynchus anatinus	ENSOANG00000007107	1 retrocopy	retro_oana_31 ,