RetrogeneDB ID: retro_nleu_816

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397273.1:28959833..28960218(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: YEATS4
• Ensembl ID: ENSNLEG00000003837
• Aliases: None
• Description: None

Sequence

>retro_nleu_816
ATGTTCAAGAGAATGGCCGAATTTGGGCCTGACTCCGGCGGGAGAGTAAAGGGTGTTACTATCGTTAAACCAATAGTTTA
CGGTAATGTTGCTCGGTATTTTGGAAAGAAAAGAGAAGAAGATGGGCACACTCATCAGTGGACAGTATATGTAAAACCAT
ATAGAAATGAGGATATGTCAGCATATGGGAAGAAAATCCAGTTTAAATTACATGAAAGCTATGGCAATCCTTTAAGAGTT
GTTACTAAACCTCCATATGAAATTACTGAAACAGGATGGGGTGAATTCCAAATAATCATCAAAATATTTTTCATTGACCC
TAAATGAAAGACCTGTAACCCTGTATCATTTGCTAAAGCTGTTTCAATCAGACACGACAGTGGTT

Alignment

ORF - retro_nleu_816 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.35 %
• Parental protein coverage: 56.39 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MFKRMAEFGPDSGGRVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKL
          MFKRMAEFGPDSGGRVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAY.KKIQFKL
Retrocopy MFKRMAEFGPDSGGRVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYGKKIQFKL

Parental  HESYGNPLRVVTKPPYEITETGWGEFEIIIKIFFIDP-NERPVTLYHLLKLFQSDTNAM
          HESYGNPLRVVTKPPYEITETGWGEF.IIIKIFFIDP.NERPVTLYHLLKLFQSDT...
Retrocopy HESYGNPLRVVTKPPYEITETGWGEFQIIIKIFFIDP>NERPVTLYHLLKLFQSDTTVV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_816 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000010793	1 retrocopy	retro_etel_836,
Microcebus murinus	ENSMICG00000002467	1 retrocopy	retro_mmur_1433,
Monodelphis domestica	ENSMODG00000020377	1 retrocopy	retro_mdom_1545,
Nomascus leucogenys	ENSNLEG00000003837	1 retrocopy	retro_nleu_816 ,
Oryctolagus cuniculus	ENSOCUG00000011552	1 retrocopy	retro_ocun_1414,
Tursiops truncatus	ENSTTRG00000013951	2 retrocopies	retro_ttru_226, retro_ttru_295,