RetrogeneDB ID: retro_nleu_67

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397281.1:3604719..3605013(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSNLEG00000018728
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSNLEG00000009325
• Aliases: None
• Description: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Source:UniProtKB/TrEMBL;Acc:G1RDQ3]

Sequence

>retro_nleu_67
ATGGCGGCGGCCGCAGCGAGTCGAGGAATCGGGGCAAAGCTGGGCCTGCGTGAGATTCGCATCCACTTACGTCAGCGCTC
GCCCGGCAGCCAGGGCGTCAGGGACTTCATTGAGAAACGCTATGTGGAGCTGAAGAAGGCGAATCCCGACCTACCCATCC
TAATCCGCGAATGCTCCGATGTGCAGCCCAAGCTCTGGGCCCGCTACGCATTTGGCCAGAAGAATGTCCCTTTGAACAAC
GTCAGTGCTGATCAGGTAACCAGAGCCCTGGAGAACGTATTAAGTGGTAAAGCC

Alignment

ORF - retro_nleu_67 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.95 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAAAAASRGIGTKLGLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYA
          MAAAAASRGIG.KLGLREIRIHL.QRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYA
Retrocopy MAAAAASRGIGAKLGLREIRIHLRQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYA

Parental  FGQEKNVPLNNFSADQVTRALENVLTGKA
          FGQ.KNVPLNN.SADQVTRALENVL.GKA
Retrocopy FGQ-KNVPLNNVSADQVTRALENVLSGKA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_67 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 12 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000015041	2 retrocopies	retro_btau_124, retro_btau_151,
Canis familiaris	ENSCAFG00000005861	1 retrocopy	retro_cfam_1343,
Callithrix jacchus	ENSCJAG00000016525	1 retrocopy	retro_cjac_3326,
Cavia porcellus	ENSCPOG00000009178	2 retrocopies	retro_cpor_1045, retro_cpor_1290,
Latimeria chalumnae	ENSLACG00000005796	1 retrocopy	retro_lcha_48,
Mus musculus	ENSMUSG00000014294	1 retrocopy	retro_mmus_2579,
Nomascus leucogenys	ENSNLEG00000009325	1 retrocopy	retro_nleu_67 ,
Otolemur garnettii	ENSOGAG00000027727	1 retrocopy	retro_ogar_1633,
Pongo abelii	ENSPPYG00000015860	1 retrocopy	retro_pabe_938,
Rattus norvegicus	ENSRNOG00000017571	1 retrocopy	retro_rnor_262,
Sus scrofa	ENSSSCG00000014371	1 retrocopy	retro_sscr_48,
Tupaia belangeri	ENSTBEG00000005978	1 retrocopy	retro_tbel_2688,