RetrogeneDB ID:

retro_nleu_398

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397264.1:49392971..49393534(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ENSG00000166136
Ensembl ID:ENSNLEG00000014774
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_398
ATGAAAGTAGCCAGGGCAGGGGTCCTGGGAATCTGGTGGCTACAAAGTACAACCCAGAATGTGGTGTCATTGAGTGCATG
GCCATCCTTCCACATACATGATCAAGGACATGCCCCTGGGGTTCTATTCCAAGACCCCAGAAGAATGGGCCACTGCTGCC
AAGAAGTATAATATGTGTGTGGAAGATTGTCAGCCTTACTTGGATGATGGCATGGGGTATGGTAACTACTCAAAGTTCTT
TGACCATTCACAGTAGGAGAGGGATCTGTGGTTTGACTGGGACCACCAAGACTTGAGGTTGAACTGTGGTGAACTGATAC
ACTGGCATCTGGACATGTGTATCAGGAACCATGTGGATATGGCCCTCCACCCCTGTTTCTTGGAATATCATGTTCAATAA
TCTCTTCAGCTTCCTGACCTTCATGAACTTTATATTCTATGTAGTGGAGAATTATTCTACCTACCAGCCTGTGGGGCCAA
AGCAGTATCCCTTTAATAATCTGTACCTGGGACAAGGCAGTAATCCCACCAAAGAACCTGAGCTAGTGGTTCACTATGAG
ATC

ORF - retro_nleu_398 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 58.2 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMAVARAGVLGVQWLQRASRNVMPLGARTASHM-TKDMFPGPYPRTP-EERAAAAKKYNMRVEDYEPYPDD
M.VARAGVLG..WLQ....NV..L.A....H.......PG.....P.EE.A.AAKKYNM.VED..PY.DD
RetrocopyMKVARAGVLGIWWLQSTTQNVVSLSAWPSFHIHDQGHAPGVLFQDP>EEWATAAKKYNMCVEDCQPYLDD
ParentalGMGYGDYPKLPDRSQHERDPWYSWDQPDLRLNWGEPMHWHLDMYNRNRVDTS-PTPVSWHVMCMQLVGFL
GMGYG.Y.K..D.SQ.ERD.W..WD..DLRLN.GE..HWHLDM..RN.VD....TPVSW..M...L..FL
RetrocopyGMGYGNYSKFFDHSQ*ERDLWFDWDHQDLRLNCGELIHWHLDMCIRNHVDMA>STPVSWNIMFNNLFSFL
ParentalAFMIFMCWMGDTYPVYQPVGPKQYPYNNLYLERGGDPSKEPERVVHYEI
.FM.F.......Y..YQPVGPKQYP.NNLYL..G..P.KEPE.VVHYEI
RetrocopyTFMNFIFYVVENYSTYQPVGPKQYPFNNLYLGQGSNPTKEPELVVHYEI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide