RetrogeneDB ID:

retro_nleu_2821

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397441.1:1106607..1107017(+)
Located in intron of:ENSNLEG00000002153
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ACP1
Ensembl ID:ENSNLEG00000008359
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2821
GCAGAAGCAATTTTCAGAAAGGTTGTAATGATCAAAATGTTTCAGATATTTTGGAGGATAGACCGTGCAGTGACCTCCAC
ATATGAAATAGGAAACCCTCCAGATTACAGGGAGGAAAATTGCATGAAGAAGCATGGTATGCCCATGAATCACATGGCTC
AGCAGATTATCAAAGAAGACTTTACTGCATTCTATTATATACCATATATCCATGAAAGCAACTTGAGAGATTTGAATAGA
AAATTCAAATCTAAAATTAATTTTGCAAAGCTAAAATTAAACTACTTGGGTGCTATGATCCATCAAAACAACTTGTTACT
GAAGACCCCTGTTAAGGGAATGACCCTGACTTTGAGATGGTGTACCAGCAATGTGTCAGGTGCTGCAGAGCATTCTTGGA
AAAAGCCCAC

ORF - retro_nleu_2821 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 58.57 %
Parental protein coverage: 86.08 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalAEAVFRKLV-TDQNISEN-WVIDSGAVSDWNVGRSPDPRAVSCLRNHGIHTAHKARQITKEDFATFDYIL
AEA.FRK.V..DQN.S...W.ID....S....G..PD.R...C...HG....H.A.QI.KEDF..F.YI.
RetrocopyAEAIFRKVV<NDQNVSDI>WRIDRAVTSTYEIGNPPDYREENCMKKHGMPMNHMAQQIIKEDFTAFYYIP
ParentalCMDESNLRDLNRK-SNQVKTCK-AKIELLGSYDPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
...ESNLRDLNRK........K.AKI.LLG.YDP.KQL..EDP..GND.DFE.VYQQCVRCCRAFLEKAH
RetrocopyYIHESNLRDLNRKFKSKINFAK<AKIKLLGCYDPSKQLVTEDPC*GNDPDFEMVYQQCVRCCRAFLEKAH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Nomascus leucogenys was not studied using RNA-Seq expression data.