RetrogeneDB ID: retro_nleu_2781

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397428.1:67068..67970(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSNLEG00000015735
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: GNAQ
• Ensembl ID: ENSNLEG00000002860
• Aliases: None
• Description: None

Sequence

>retro_nleu_2781
CTGAGAATCATCCATGGGTCAGGATACTCTGATGAAGATAAAAGGGGCTTCACCAAGCTGGTGTATCAGAACATCTTCAC
GGCCATGCAGGCCATGAACAGAGCCATGGACACACTCAAGATCTCATACAAGTATGAGCACAATAAGGCTCATGCACCAT
TAGTTTGAGAAGTTGATGTGGAGAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATGAAGAGTTTATGGAATGAT
CCTGGAATCAGGAATGCTATGATAGACGACGAGAATATCAATTATCTGACTCTACCAAATACTATCTTAATGACTTGGAC
CGCGTAGCTGACCCTGCCTACCTGCCTACTCAACAAGATGTGCTTAGAGTTCGAGTCCCCACCACAGGGATCATCGAATA
CCCCTTTCACTTACAAAGTGTCATTTTCAGAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACT
GCTTTGAAAATGTCACCTTTATCATGTTTCTAGTAGCGCTTAGTGAATATGATCAAGTTCTGGTGGAGTCAGACAATGAG
AACCGAATGGAGGAAAGCAAGGCTCTCTTTAGAACAATTATCACATATCCCTGGTTCCAGAACTCCTCGGTTATTCTGTT
CTTGAACGAGAAAGATCTTCCAGAGGAGAAAATCATGTATTCCCATCTAGTCGACTACTTCACAGAATATGATGGACCCC
AGAGACATGCCCAGGCAGCCCGAGAATTCATTCTGAAGATGTTCGTGGACCTGAACCCAGACAGTGACAAAATTATCTAC
TCCCACTTCACATGCGCCACAGACACCGAGAATATCCGCTTTGTCTTTGCTGCCGTCAAGGACACCATCTTCCAGTTGAA
CCTGAAGGACTACAATCTGGTC

Alignment

ORF - retro_nleu_2781 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.03 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEKVSAFENPY
          .RIIHGSGYSDEDKRGFTKLVYQNIFTAMQAM.RAMDTLKI.YKYEHNKAHA.LV.EVDVEKVSAFENPY
Retrocopy LRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMNRAMDTLKISYKYEHNKAHAPLV*EVDVEKVSAFENPY

Parental  VDAIKSLWNDPGI-QECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFDLQ
          VDA.KSLWNDPGI.QECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPF.LQ
Retrocopy VDAMKSLWNDPGI<QECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQDVLRVRVPTTGIIEYPFHLQ

Parental  SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS
          SVIFRMVDVGGQRSERRKWIHCFENVT.IMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS
Retrocopy SVIFRMVDVGGQRSERRKWIHCFENVTFIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS

Parental  SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENI
          SVILFLN.KDL.EEKIMYSHLVDYF.EYDGPQR.AQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENI
Retrocopy SVILFLNEKDLPEEKIMYSHLVDYFTEYDGPQRHAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENI

Parental  RFVFAAVKDTILQLNLKEYNLV
          RFVFAAVKDTI.QLNLK.YNLV
Retrocopy RFVFAAVKDTIFQLNLKDYNLV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2781 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Nomascus leucogenys	ENSNLEG00000002860	2 retrocopies	retro_nleu_2644, retro_nleu_2781 ,
Pongo abelii	ENSPPYG00000019311	1 retrocopy	retro_pabe_3536,
Tupaia belangeri	ENSTBEG00000009447	2 retrocopies	retro_tbel_2487, retro_tbel_2974,