RetrogeneDB ID: retro_nleu_2586

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397376.1:596037..596333(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NAA50
• Ensembl ID: ENSNLEG00000004624
• Aliases: None
• Description: None

Sequence

>retro_nleu_2586
ATGAAAGGTAGCTGGATGGAGCTGGCAGATGGGACACCACACAATACTAAACAGTTGAAGAGACTGAATCAGGTTATCTT
TTCAGTCAGCTACAATGGTAAGTTCTACAAGGATGTGATGGAGGTGGTAAACGATCAAAACTTGCCTGTTCCAGTGATGT
TCCTGTAGGTGCAGTGTACTCTAGGGTGGCTCATTCACAGAATCAGAAAAGACTTTACATCATCACACTTGGATATCTGA
CACCTTACCAAAGGCTAGGAATAGGAACTACAATGTTAAATCATGTCTTAAACATG

Alignment

ORF - retro_nleu_2586 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74. %
• Parental protein coverage: 58.58 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MKGSRIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEV-GELAKLAYFNDIAVGAVCCRVDHSQNQ
          MKGS..EL.D.TPHN.KQLKRLNQVIF.VSYN.KFYKDV.EV.G...KLA...D..VGAV..RV.HSQNQ
Retrocopy MKGSWMELADGTPHNTKQLKRLNQVIFSVSYNGKFYKDVMEV<GKRSKLACSSDVPVGAVYSRVAHSQNQ

Parental  KRLYIMTLGCLAPYRRLGIGTKMLNHVLNI
          KRLYI.TLG.L.PY.RLGIGT.MLNHVLN.
Retrocopy KRLYIITLGYLTPYQRLGIGTTMLNHVLNM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2586 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000001027	1 retrocopy	retro_dnov_2574,
Homo sapiens	ENSG00000121579	1 retrocopy	retro_hsap_874,
Nomascus leucogenys	ENSNLEG00000004624	1 retrocopy	retro_nleu_2586 ,
Otolemur garnettii	ENSOGAG00000011197	1 retrocopy	retro_ogar_157,
Procavia capensis	ENSPCAG00000009780	2 retrocopies	retro_pcap_205, retro_pcap_459,
Sorex araneus	ENSSARG00000004134	1 retrocopy	retro_sara_447,
Ictidomys tridecemlineatus	ENSSTOG00000009438	1 retrocopy	retro_itri_1703,
Tursiops truncatus	ENSTTRG00000009849	3 retrocopies	retro_ttru_1729, retro_ttru_1814, retro_ttru_948,