RetrogeneDB ID: retro_nleu_2475

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397359.1:315833..316223(-)
• Located in intron of: ENSNLEG00000008227

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FAM122C
• Ensembl ID: ENSNLEG00000002084
• Aliases: None
• Description: None

Sequence

>retro_nleu_2475
GGCGGGGGCCTCAGGAGGTCTAACAGCGCCCCCCTGATCCACGGCCTCAGTGACACTTCGCCGGTGTTCCAGGCCGAGGC
GCCGAGCGCCAGGCGGAACAGCACAACGTTCCCGAGCCGCCACGGCCTGCTGCTACCGGCCTCCCCTGTCCGCATGCACA
GCAGCCGCTTGCACCAGATCAAACAAGAAGAGGGCATGGACTTGATCAACCGAGAGACGGTCCACGAGCGGGAGGTGCAG
ACCGCAATGCAGATAAGCCACTCCTGGGAGGAAAGTTTCAGCCTGAGTGACAACGACGTGGAGAAATCCGCCTCTCCCAA
GCGCATCGATTTCATTCCTGTGTCACCAGCACCGTCACCCACTCGGGGAATTGGGAAGCAGTGTTTTTCG

Alignment

ORF - retro_nleu_2475 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.62 %
• Parental protein coverage: 69.15 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GNILRRVNSAPLINGLGFNSQVLQANKLRIRTNRTTFRNQRSLLLPPSPFHGSISRLHQIKQEEAMDLIN
          G..LRR.NSAPLI.GL...S.V.QA.....R.N.TTF.....LLLP.SP.....SRLHQIKQEE.MDLIN
Retrocopy GGGLRRSNSAPLIHGLSDTSPVFQAEAPSARRNSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLIN

Parental  RETMYEWKLQTAIQISQSWEEGLKLNDNGLQKSSSLKCIDLTPVSSMASSIKKTEKSTSS
          RET..E...QTA.QIS.SWEE...L.DN...KS.S.K.ID..PVS...S......K...S
Retrocopy RETVHEREVQTAMQISHSWEESFSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2475 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000156500	1 retrocopy	retro_hsap_35,
Nomascus leucogenys	ENSNLEG00000002084	1 retrocopy	retro_nleu_2475 ,
Oryctolagus cuniculus	ENSOCUG00000029737	1 retrocopy	retro_ocun_205,