RetrogeneDB ID:

retro_nleu_2388

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397350.1:5472532..5473711(+)
Located in intron of:ENSNLEG00000011225
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:LARP4
Ensembl ID:ENSNLEG00000017798
Aliases:None
Description:La ribonucleoprotein domain family, member 4 [Source:HGNC Symbol;Acc:24320]


Retrocopy-Parental alignment summary:






>retro_nleu_2388
AATGCAGAGCTCTCAGAAGATATATGTAAAGAATATGAAGTAATGTGTTCTTCATCTTGTGAAACCACAAGAAATACTAC
AGGCATTGAAGAATCAACTGATGGGATGATTTTAGGACCAGATCTGAGTTACTAAATATATGATGTTTCTGGAGAAAGCA
ATTCAGCAATTTCTACAGAAGACCTAAAAGAATGTCTAAAGAAACAATTAGAATTCTGTTTTTCATGAGAAAATTTGTCA
AAGGATCTTTACTTGATATCTCAAATGGATAGTGATCAGTTCATCCCAATTTGGACAGTTGTTAACATGGAAGAAATAAA
AAAATTGACCACAGACCCTGATGTAATTCTTGAAGTGTTAAGATCTTCTCCCATGGTACAAATTGATGAGAAGGGTAAAA
AGTGAGACCAAGTCATAAGCGTTGTATTGTGATTCTTAGAGAGATTCCTGAAACAACACCAATAGGGGAAGTGAAAGTTT
TGTTCAAATTGAAAACTGCCCCAAAGTGATAAGCTGTGAGTTTGCACACAGTAGCAGCTGGTATATCACTTTCCAGTCAG
ACACAGATGCACAACAGGCTTTTAAATCCTTAAGAGAAGAAGTTAAAACATTTCAGGGCAAGCCAATTATGGCAAGGATA
AAAGCCATCAATACATTTTTTGCTAAGAATTGTTACTGATTAATGGATTCTAGTATCTGTAGTCAGCCCATTCAAACTCA
AGCACAGTATGCCTCCCCAGTCTTCATGCAGCCTGTATATAATCCTCACCAGCAATTCTCAGTCTATAGTATTATTCCAC
AGTCTTGGTCTCCAAATCCTACACCTTACTTTGAAACACCACTGGCCCACTTTGCCAATGGTAGTTTTGTGAATGGCTTT
AATTCACCAGGATCTTATAAAACAAATGCTGCTGCTGTGAATATGGGTCGATCATTCCAAAAAAAAAATCTGAAGCCTCA
TTTTAGGTCATCCAGTGGTTCAGAACACTCAACAGAGGACTCTGTATCATTGGGGGATGGACAGTTGAACAGATGTAGTT
CAAAAAATTTTTCAACTGAAAGCATAATCCTACAGTAACTGGGGATTAGGAGCAAACTTAACTTCAAAAGGAGACTTCCA
CTTTGCAGATGGAACAGAATGGGGACTATGGTAGGGGCAGGAGAACTCTTTTCAGAGGT

ORF - retro_nleu_2388 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.2 %
Parental protein coverage: 57.33 %
Number of stop codons detected: 5
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalNAELSEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSYQIYDVSGESNSAVSTEDLKECLKKQ
NAELSEDICKEYEVM.SSSCETTRNTTGIEESTDGMILGP.DLSY.IYDVSGESNSA.STEDLKECLKKQ
RetrocopyNAELSEDICKEYEVMCSSSCETTRNTTGIEESTDGMILGP-DLSY*IYDVSGESNSAISTEDLKECLKKQ
ParentalLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEK-VRPS
LEFCFS.ENLSKDLYLISQMDSDQFIPIWTV.NMEEIKKLTTDPD.ILEVLRSSPMVQ.DEKG.K.VRPS
RetrocopyLEFCFS*ENLSKDLYLISQMDSDQFIPIWTVVNMEEIKKLTTDPDVILEVLRSSPMVQIDEKGKK<VRPS
ParentalHKRCIVILREIPETTPIEEVKALFKS-ENCPKVISCEFAHNSNWYITFQSDTDAQQAFKYLREEVKTFQG
HKRCIVILREIPETTPI.EVK.LFK..ENCPKVISCEFAH.S.WYITFQSDTDAQQAFK.LREEVKTFQG
RetrocopyHKRCIVILREIPETTPIGEVKVLFKL<ENCPKVISCEFAHSSSWYITFQSDTDAQQAFKSLREEVKTFQG