RetrogeneDB ID:

retro_nleu_2332

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397344.1:4176748..4177232(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ARL2BP
Ensembl ID:ENSNLEG00000002803
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2332
ATGGGTACTTTAGAAGAAGAGAGCTTTGATCTGTCCTTCTCCGCCTCTGATGCAGAATTTGATGCTGTGGTTGCATAATT
AGAGGACATTGTCATGGATGAAAAGTTCCATTTATTACAGGGAAATTTATAGACAAGTACTACCTGGAGTTTTGAGGACA
CGGAAGAGAATAAACTAACCTACGTGCCTATTTTTAATAAATATATTTTTTTGTCAGAAAAAATATGTTGAAGAATAACC
TCTGTAGCAGATTCCTGGATTCAACGTAGCGGTTTTCACAACTATGTTACAGCATCATAAAGATGAAGTGGCTGGTGGCA
TATTCGACATGCTGCTCACCTTTACCAATGTTTTGGCTTTTAAATAAATGTTTTTGGACCACAGAGCAGAAAAAGAAGGC
TGAGGACTGGACTTAAGCAGAGGTCCAGTGGTGACTTTGTTGTGCAAATCATCTATACCAGCTTTCCAGAACAATCTGCA
ACAC

ORF - retro_nleu_2332 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.36 %
Parental protein coverage: 100. %
Number of stop codons detected: 5
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMDALEEESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRN-FMDKYYLEF-EDTEENKLTYTPIFNE
M..LEEESF.LSFS.ASDAEFDAVV..LEDI.MD..F.LLQ.N.F.DKYYLEF.EDTEENKLTY.PIFN.
RetrocopyMGTLEEESFDLSFS-ASDAEFDAVVA*LEDIVMDEKFHLLQGN<FIDKYYLEF>EDTEENKLTYVPIFNK
ParentalYICLVEK-YIEEQLLQRIPGFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEGRGL
YI.L.EK.Y.EE..L..IPGFN.A.FTT.LQHHKDEVAG.IFDMLLTFT..LAFK.MFLD.RAEKEG.GL
RetrocopyYIFLSEK>YVEE*PL*QIPGFNVAVFTTMLQHHKDEVAGGIFDMLLTFTNVLAFK*MFLDHRAEKEG*GL
ParentalDLSSGLVVTSLCKSSLPASQNNLRH
DLS.G.VVT.LCKSS.PA.QNNL.H
RetrocopyDLSRGPVVTLLCKSSIPAFQNNLQH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide