RetrogeneDB ID: retro_nleu_1671

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397303.1:4247293..4247540(-)
• Located in intron of: ENSNLEG00000002595

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UBE2V2
• Ensembl ID: ENSNLEG00000013382
• Aliases: None
• Description: None

Sequence

>retro_nleu_1671
GGTCTTGTTAGCTGTGGCCTTGAAGGTGATGAAGAAAGACACTTTCAAGGTGGACAGGTATAATTATTGGGTCACCAAGA
ACAAATTTGAAAAACAAAATATGCCGATTGAAATTAGCATGTAGAACCTAAATATCCAGAAGCTTCTTCATTGAATAAAT
TTGTAGCAAAAGTTTATGTAAACTGAATTAGTAATTCCTAGTGAAATAGTGGATGAATTGAGAATAGTGGTGTTGGTAAA
AATGGAA

Alignment

ORF - retro_nleu_1671 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.12 %
• Parental protein coverage: 56.55 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  GTVSWGLEDDED-MTLTRWTGMIIGPPRTNYENRIYSLKVEC-GPKYPEAPPSVRFVTKINMNGINNS-S
          G.VS.GLE.DE...TL.RWTG.IIG.PRTN..N.I..LK..C..PKYPEA.....FV.K...N.I.NS.S
Retrocopy GLVSCGLEGDEE<KTLSRWTGIIIGSPRTNLKNKICRLKLAC>EPKYPEASSLNKFVAKVYVN*ISNS>S

Parental  GMVDARSIPVLAKWQ
          ..VD...I.VL.K..
Retrocopy EIVDELRIVVLVKME

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_1671 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 26 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000016581	1 retrocopy	retro_meug_2093,
Monodelphis domestica	ENSMODG00000010191	10 retrocopies	retro_mdom_1065, retro_mdom_1151, retro_mdom_1167, retro_mdom_1435, retro_mdom_1660, retro_mdom_173, retro_mdom_1979, retro_mdom_736, retro_mdom_786, retro_mdom_979,
Mus musculus	ENSMUSG00000022674	4 retrocopies	retro_mmus_1385, retro_mmus_189, retro_mmus_2048, retro_mmus_2770,
Nomascus leucogenys	ENSNLEG00000006987	8 retrocopies	retro_nleu_1554, retro_nleu_1612, retro_nleu_1996, retro_nleu_2206, retro_nleu_2773, retro_nleu_3025, retro_nleu_304, retro_nleu_566,
Nomascus leucogenys	ENSNLEG00000013382	1 retrocopy	retro_nleu_1671 ,
Oryctolagus cuniculus	ENSOCUG00000006933	1 retrocopy	retro_ocun_5,
Rattus norvegicus	ENSRNOG00000001829	1 retrocopy	retro_rnor_1181,