RetrogeneDB ID:

retro_nleu_1429

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397292.1:22498676..22499270(-)
Located in intron of:ENSNLEG00000004527
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL13A
Ensembl ID:ENSNLEG00000005211
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1429
CAGGTCTTGGTGCTTGATGGTCGAGGCTGTCTCCTGGGCCGCCTGGCGGCCATCGTGGCTAAACAGGCACCGCTGGGCTG
GAAGGTGGTGGTTGTACGCTGCGAAGGCATCAACATTTCTGGCAATTTCTACAGAGACGAGGTGCAGTACCTGGCTTTCC
TCCGCAAGCGGATGAACACCAACCGTTCCCCAGGCCCTACCGTCTCCGGGCCCCCAGCTGCATCTTCTGGCGGAGCGTGC
GAGGCAAGCTGCCCCCAAGACCAAGCGAGGCCAGGCGGCTCTGGACCGCCTCAAGGCGTGTGAGGGCATCCCACCGCCCT
ACGACAAGAAAACACGGGTGGTGGTTCCTGCTGCCCTCAAGGTCTGCGTCTGAAGCCTACGAGAAAGTTTGCCTTTCTCG
GGCGCCTGGCTCACCAGGTTGGCTGGAAGTAGCAGGCGGTGACAGCCACCCTGGAGGCGAAGAGGAAGGAGAAGGCCAAG
ACCCACTACTGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCAGAGAAGAAAGTGGAGAAGAAAACTGACAAATA
CACAGAGGTCTTCAAGACCCATGGACTCCTGGTC

ORF - retro_nleu_1429 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.18 %
Parental protein coverage: 98.49 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGP-YHF
QVLVLDGRG.LLGRLAAIVAKQ..LG.KVVVVRCEGINISGNFYR....YLAFLRKRMNTN.S.GP.Y..
RetrocopyQVLVLDGRGCLLGRLAAIVAKQAPLGWKVVVVRCEGINISGNFYRDEVQYLAFLRKRMNTNRSPGP<YRL
ParentalRAPSRIFWRTVRGMLPH-KTKRGQAALDRLKVFDGIPPPYDK--RMVVPAALKV-VRLKPTR-FAYLGRL
RAPS.IFWR.VRG.LP..KTKRGQAALDRLK...GIPPPYDK..R.VVPAALKV..RLKPTR.FA.LGRL
RetrocopyRAPSCIFWRSVRGKLPP<KTKRGQAALDRLKACEGIPPPYDKKTRVVVPAALKV<LRLKPTRKFAFLGRL
ParentalAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGLLV
AH.VGWK.QAVTATLE.KRKEKAK.HY.KKKQLMRLRKQAEK.VEKK.DKYTEV.KTHGLLV
RetrocopyAHQVGWK*QAVTATLEAKRKEKAKTHYWKKKQLMRLRKQAEKKVEKKTDKYTEVFKTHGLLV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide