RetrogeneDB ID: retro_nleu_1423

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397292.1:15457930..15458191(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DSCR6
• Ensembl ID: ENSNLEG00000004521
• Aliases: None
• Description: None

Sequence

>retro_nleu_1423
TGGAGACCTATGATCCTGACACCGGCAGATGCTGAGCTGACCAGAACTGGAAGCCAGTTTAAACCTGGGGGAGATCAAGA
AACTTTTGGATTAAAGGAAGTCTTCAGGTTTCAGCATCCTGTAAGACTTTACTTACCCTTTTTGAAATGTCAAGAATATT
TGCAGTGTTCTGGGGAAAAAGTGCTGGTCAGTTTTCCAGTGCAAGCCATGATATACTTCTATAATGATGAGTCTGATTCA
GATGATGAAGAGCAAGACGAA

Alignment

ORF - retro_nleu_1423 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.07 %
• Parental protein coverage: 56.13 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  WRPWIQTPGDAELTRTGRPLEPRADQHSFGSKGAFGFRHPVRVYLPMSKRQEYLQSSGEQVLASFPVQAT
          WRP.I.TP.DAELTRTG....P..DQ..FG.K..F.F.HPVR.YLP..K.QEYLQ.SGE.VL.SFPVQA.
Retrocopy WRPMILTPADAELTRTGSQFKPGGDQETFGLKEVFRFQHPVRLYLPFLKCQEYLQCSGEKVLVSFPVQAM

Parental  IDFYDDESTESASEAEE
          I.FY.DES.....E..E
Retrocopy IYFYNDESDSDDEEQDE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_1423 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000036019	1 retrocopy	retro_btau_1393,
Homo sapiens	ENSG00000183145	1 retrocopy	retro_hsap_1407,
Gorilla gorilla	ENSGGOG00000006091	1 retrocopy	retro_ggor_1091,
Nomascus leucogenys	ENSNLEG00000004521	1 retrocopy	retro_nleu_1423 ,
Pongo abelii	ENSPPYG00000011408	1 retrocopy	retro_pabe_1163,
Pan troglodytes	ENSPTRG00000013896	1 retrocopy	retro_ptro_964,