RetrogeneDB ID:

retro_nleu_1361

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397291.1:4375980..4376591(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS4XP21
Ensembl ID:ENSNLEG00000018121
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1361
GAAATGAAGACTATTTGCATGCAGCAGTTCATTAAGATTGATGGCAAGGTCTGCACTGATAAAATCTACCCTGCTGGATT
CATGGATGTCCTCAGCATTGACAAGACGGGAGAGAATTTTTGTCTGATCTATGACACCAAGGGTCGCTTTGCTGTACATT
GTATTACACCTGAGGAAGCCAAGTACAAGTTGTGCAAATTGAGAAAAATCTTTGTGGGCACAAAAGGAATCCCTCATCTG
GTGACTTATGTTGCTCACACCATCCGCTACCCTGATCCCTTCATCAAGGTGAATGATACCATTCATATGGATTTGGAGAC
TGGCAAGATTACTTGATTTCATCAAGTTACACTGGTAACCTGGGTATGGTGACTGAAGGTGCTAACCTGTGAAGAATTGG
TGTGATCACCAACAGAGAGAGGCACCCTGGATCTTGTGACATGGTTCATGTGAAAGATGCCAATGGCCACAGCTTTGCCA
CTCGACTTTCCAATATTTTTGTTATTGGCAAGGGCAACAAACCATGGATTTCTCTTCCCTGAGGAAAGGGTATCCACCTC
ACCATTGCTGAAGACAGAGACAAAAGACTGGTGGCCAAACAGAGCACTGGG

ORF - retro_nleu_1361 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.9 %
Parental protein coverage: 77.57 %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKI
E.K.ICMQ.FIKIDGKV.TD..YPAGFMDV.SIDKTGENF.LIYDTKGRFAVH.ITPEEAKYKLCK.RKI
RetrocopyEMKTICMQQFIKIDGKVCTDKIYPAGFMDVLSIDKTGENFCLIYDTKGRFAVHCITPEEAKYKLCKLRKI
ParentalFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFD-TGNLCMVTGGANLGRIGVITNR
FVGTKGIPHLVT..A.TIRYPDP.IKVNDTI..DLETGKIT.F.....TGNL.MVT.GANL.RIGVITNR
RetrocopyFVGTKGIPHLVTYVAHTIRYPDPFIKVNDTIHMDLETGKIT*FHQVT<TGNLGMVTEGANL*RIGVITNR
ParentalERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG
ERHPGS.D.VHVKDANG.SFATRLSNIFVIGKGNKPWISLP.GKGI.LTIAE.RDKRL.AKQS.G
RetrocopyERHPGSCDMVHVKDANGHSFATRLSNIFVIGKGNKPWISLP*GKGIHLTIAEDRDKRLVAKQSTG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide