RetrogeneDB ID:

retro_nleu_1117

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397282.1:15886044..15886450(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MTX2
Ensembl ID:ENSNLEG00000006020
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1117
TTGTATCTTCAGTGGTTTGATGAAGCTAAATTGGGGAGATCACTCATGCTAGGTATGGATCTCCTTACCCGTGGCCTCTG
CATCATATTTTGGCCTATCAGAAATAGTGAAAAGTCAAATGTAAGATGAAAGCTATCAGATGGGGTAAGAGTACCCTGAA
CCAGGTCTTAGAAGATATAGGCCAGTGCTGTCAAGCTCTCTCTCTCAAAGTCTGGGAACACAACCATATTTTTTTAATAA
GCAGCTTCCTGAATTTGATACACTGGTATTTGGCCATTTGTACACCATTCTTCCCACACAATTGATGAATGATAAACTTT
CTGAGATGAAAAACTACAGCAAGCTTCTTGCTCTCTGCAGAAGAATTGAAAGGCACTATCTTGACTATTGTGATAAAGGC
AGATTG

ORF - retro_nleu_1117 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.22 %
Parental protein coverage: 51.71 %
Number of stop codons detected: 2
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalLYLQWCDEAT-VGEITHARYGSPYPWPLNHILAYQKQWEVKRKMKAIGWGKKTLDQVLEDVDQCCQALSQ
LYLQW.DEA...GEITHARYGSPYPWPL.HILAYQK...VK.KMKAI.WGK.TL.QVLED..QCCQALS.
RetrocopyLYLQWFDEAK<IGEITHARYGSPYPWPLHHILAYQK**KVKCKMKAIRWGKSTLNQVLEDIGQCCQALSL
ParentalRL-GTQSYF-FNKQPTELDALVFGHLYTILTTQLTNDELSEKVKNYSNLLAFCRRIEQHYFEDRGKGRL
...G....F.FNKQ..E.D.LVFGHLYTIL.TQL.ND.LSE..KNYS.LLA.CRRIE.HY.....KGRL
RetrocopyKV>GNTTIF>FNKQLPEFDTLVFGHLYTILPTQLMNDKLSE-MKNYSKLLALCRRIERHYLDYCDKGRL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Nomascus leucogenys was not studied using RNA-Seq expression data.