RetrogeneDB ID:

retro_nleu_1104

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397281.1:14193257..14193853(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SLC35C2
Ensembl ID:ENSNLEG00000006880
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1104
TTCACAATAACCAAATATTTAGCTGTCCTCTTCATCGTCAATCTTCTCTCTGATCTCCAAGCTGGAGGAGCTGCAATGGC
ACTGGTCCTTGTGATCCTCCTCATCGCCAGGGGTCTCTTCATGTTCACCTTCAAGTCCACACAGCCCAATGTGGAGGGCT
TCGCCTTGGTGCTGGGGACCTCGCTCATTGGTGGCATTCGCCGAACCCTCACCCAGACATTCCTGCAGAAGGCTGATCTT
GGCTTCCAGGACTCCATCGACAGCATGCTCCACCTGCAGCCGCTCATGTTTCTGGGGCTTTTCCCTCTCTTTGCTGTATG
TGAAAGTCGCCATTTGTCCACGTCTGGGGAAATATTTCATTTCCAGGATACAGGGCTGCTCCTGGGGTACTTGGGAGCCT
CTTCCTTGGTGGGCGTCTCACCTTTGGTTTGGACTTCTCTGAGTTCCTCCTGGTCTCCAGACCCTCCAGCCTCACTCTCT
CCATTGCTGGCATTTGGAAGGAAGTCTGCACTTTGCTGTTGGCAGCTCATCTGCTGGATGATCAGATCAGCCACCTGAAC
TGACTGGGCTTCCTTCTCTGCCTCTCGGGAATATCC

ORF - retro_nleu_1104 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.23 %
Parental protein coverage: 54.52 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalYTMTKSSAVLVM-KMVSLIFKLEELR-AALVLVVLLIAGGLFMFTYKSTQFNVEGFALVLGASFIGGIRW
.T.TK..AVL......SLI.KLEEL...ALVLV.LLIA.GLFMFT.KSTQ.NVEGFALVLG.S.IGGIR.
RetrocopyFTITKYLAVLFI>SIFSLISKLEELQ<MALVLVILLIARGLFMFTFKSTQPNVEGFALVLGTSLIGGIRR
ParentalTLTQMLLQKAELGLQNPIDTMFHLQPLMFLGLFPLFAVFEGLHLSTSEKIFRFQDTGLLL-RVLGSLFLG
TLTQ..LQKA.LG.Q..ID.M.HLQPLMFLGLFPLFAV.E..HLSTS..IF.FQDTGLLL..VLGSLFLG
RetrocopyTLTQTFLQKADLGFQDSIDSMLHLQPLMFLGLFPLFAVCESRHLSTSGEIFHFQDTGLLL<GVLGSLFLG
ParentalGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFALCLSGIS
G.L.FGL.FSEFLLVSR.SSLTLSIAGI.KEVCTLLLAAHLL.DQIS.LN.LGF.LCLSGIS
RetrocopyGRLTFGLDFSEFLLVSRPSSLTLSIAGIWKEVCTLLLAAHLLDDQISHLN*LGFLLCLSGIS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide