RetrogeneDB ID: retro_mputfur_954

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896981.1:4396235..4396592(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BCL7C
• Ensembl ID: ENSMPUG00000011988
• Aliases: None
• Description: B-cell CLL/lymphoma 7C [Source:HGNC Symbol;Acc:1006]

Sequence

>retro_mputfur_954
AGTTTCCATTCGGAAGGCTCCCTGCAAAATGGCACTGATCCCAGCCCTGGGGGCATTTGCCAGCCCAGCTGCCCTTTGTC
ACCTCCCAGACTACCAGAAGGGGTTCCAGAGGGTGCTCGGCCCCCACGGCTGGTCTAAAGAGAGCCATCCCGGGAGCATT
ACTGCAGGCAGCATTGACGAACCCCAGTGCTGACCAAGGAGGATTCTGTTTCAGAACTGCTGGAGGCTGAGGCCTTTGGA
GTTAACCCTACCTTTGAGCTAGTGCTGCCTGTCCCCAAGGCAGCCCAGGGCAACACAGAGCACTCAGGGTACCCTCTCCC
CCTATTCAAGCACTACTGCCCAAATGCCCCGACCCCT

Alignment

ORF - retro_mputfur_954 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.29 %
• Parental protein coverage: 54.38 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SFHSEGSLQKGTEPSPGGTPQPSRPVSPAGPPEGVPEDAQPPRL-GQERDPGAETAGSTDEP-PMLTKEE
          SFHSEGSLQ.GT.PSPGG..QPS.P.SP...PEGVPE.A.PPRL...E..PG..TAGS.DEP.P.LTKE.
Retrocopy SFHSEGSLQNGTDPSPGGICQPSCPLSPPRLPEGVPEGARPPRL>SKESHPGSITAGSIDEP<PVLTKED

Parental  PVPELLEAEAPEAYPVFEPVPPVPEAAQGDTEDSEGAPPL-KRICPNAPDP
          .V.ELLEAEA....P.FE.V.PVP.AAQG.TE.S....PL.K..CPNAP.P
Retrocopy SVSELLEAEAFGVNPTFELVLPVPKAAQGNTEHSGYPLPLFKHYCPNAPTP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_954 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_954 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 21 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000007604	2 retrocopies	retro_amel_1090, retro_amel_1613,
Bos taurus	ENSBTAG00000008412	1 retrocopy	retro_btau_618,
Canis familiaris	ENSCAFG00000016715	1 retrocopy	retro_cfam_898,
Dipodomys ordii	ENSDORG00000001676	1 retrocopy	retro_dord_517,
Equus caballus	ENSECAG00000000482	1 retrocopy	retro_ecab_704,
Felis catus	ENSFCAG00000029090	1 retrocopy	retro_fcat_1969,
Macaca mulatta	ENSMMUG00000003225	13 retrocopies	retro_mmul_1247, retro_mmul_1613, retro_mmul_1818, retro_mmul_2108, retro_mmul_2153, retro_mmul_2644, retro_mmul_390, retro_mmul_724, retro_mmul_740, retro_mmul_750, retro_mmul_755, retro_mmul_791, retro_mmul_975,
Mustela putorius furo	ENSMPUG00000011988	1 retrocopy	retro_mputfur_954 ,