RetrogeneDB ID: retro_mputfur_917

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896971.1:8962257..8962863(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GUK1
• Ensembl ID: ENSMPUG00000001011
• Aliases: None
• Description: guanylate kinase 1 [Source:HGNC Symbol;Acc:4693]

Sequence

>retro_mputfur_917
CTTCATCCAGGGATGTCAGGACCTTGGCCTGTCCAGCTGAGTGGACTCTCAGGGGCCGGGAAGAGCACCCTGTTCAAGAG
ACTCCTGCAGGAGCACCGCAGTGTCTTCGGGTTCAGCGTGTCCCATACCACGCCGGACCTGCGGCCTTGAGAAGAGAATG
GCAGAGATTACTACTTCGTGACCAGGGCGGTGAGGCAGCGGGACATGGCCACCGGAGACTTCATCGAGCACGCTGAGTTC
TCGGGGGACGTGGATGGGACTAGCAAAGCAGCTGTGCAGGCCGTTCAGGCCAGGAACGGCATCTGCGCACTGGACGTTGA
CCTGCAGGGCGTGCGTGACATCAGGAAGACGGACCTGTGGCCCATCTACATCTTCGTGGGGCTGCCCTCGCTGGACGTCC
TGGAGCAGCATCTGCGGCGGCGCAACACGGAGACAGAGGAGAGCCTGGCCAAGCGTCTGGCCTCCGCTTGGGTGGACATG
GAGAGCAGCAAGAAACAGGGCCTGTTCGACCTGGTCATCATCAACGACAACCTGGACATGGCCTACCAGACCCTGGAGGA
GGCGCTGGCGGAGGAAATCAAGAAGGTTCAGAAGACCAGTTGCTCC

Alignment

ORF - retro_mputfur_917 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.68 %
• Parental protein coverage: 91.82 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LPAGMSGPRPVVLSGPSGAGKSTLLKRLLQEHGSVFGFSVSHTTRDPRPGEENGKDYYFVTREVMQRDIA
          L..GMSGP.PV.LSG.SGAGKSTL.KRLLQEH.SVFGFSVSHTT.D.RP.EENG.DYYFVTR.V.QRD.A
Retrocopy LHPGMSGPWPVQLSGLSGAGKSTLFKRLLQEHRSVFGFSVSHTTPDLRP*EENGRDYYFVTRAVRQRDMA

Parental  AGDFIEHAEFSGNLYGTSKAAVRAVQAMNRICVLDVDLQGVRNIKKTDLRPIYIFVQPPSLDVLEQRLRQ
          .GDFIEHAEFSG...GTSKAAV.AVQA.N.IC.LDVDLQGVR.I.KTDL.PIYIFV..PSLDVLEQ.LR.
Retrocopy TGDFIEHAEFSGDVDGTSKAAVQAVQARNGICALDVDLQGVRDIRKTDLWPIYIFVGLPSLDVLEQHLRR

Parental  RNTETEESLAKRLAAARVDMESSKEQGLFDLVIINDNLDTAYRTLEEALSEEIKNVQRTSCS
          RNTETEESLAKRLA.A.VDMESSK.QGLFDLVIINDNLD.AY.TLEEAL.EEIK.VQ.TSCS
Retrocopy RNTETEESLAKRLASAWVDMESSKKQGLFDLVIINDNLDMAYQTLEEALAEEIKKVQKTSCS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_917 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_917 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000013790	1 retrocopy	retro_mdom_121,
Mustela putorius furo	ENSMPUG00000001011	1 retrocopy	retro_mputfur_917 ,