RetrogeneDB ID: retro_mputfur_857

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896960.1:2298674..2299098(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MRPS16
• Ensembl ID: ENSMPUG00000003777
• Aliases: None
• Description: mitochondrial ribosomal protein S16 [Source:HGNC Symbol;Acc:14048]

Sequence

>retro_mputfur_857
GGAAACTGTAGAGCTGGGGGATCAGTGCTGGCACCACAGGCCAGCTGCACCAGGGTCCCGCTCACTGCTGTCCTCTGCAA
GGTTTACCACGGAGGCCAGTTAACAGTCCGCCTTGCCCGGAGTGGCTGTGTCAACCTGCTTCTCCACCACAATGTGGCTG
CTTGCAGTAAGTGTTCCAGGGATGGCTGTTCCGTGGAGCAGTTGGGTTCCTGTGATGCATTGGCCTGCAGTCACGGAGAA
AAAAATACAGAGCAACCTGGACCAGATCCAGCATTGAATCAACTTTGGAGCCCACGTCTCTAAGCCTGTAGAGTAGCTTT
CGGGTATTTCTGGCTTTTCCCCTCTGCATCCCATCATGATCACAAATGCTGAGAGGCTGCAAAGGAAATGGGCACAGGAA
GTCCTCTTAGTGACTCAGAGAACA

Alignment

ORF - retro_mputfur_857 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.54 %
• Parental protein coverage: 94.19 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GGCALGGAASGAQASAHVGCTMVQLTTVLCKAYRGGHLTIRLALSGCTNRPFYRIVAAHNKCPRDGRFVE
          G.C..GG.....QAS....CT.V.LT.VLCK.Y.GG.LT.RLA.SGC.N......VAA..KC.RDG..VE
Retrocopy GNCRAGGSVLAPQAS----CTRVPLTAVLCKVYHGGQLTVRLARSGCVNLLLHHNVAACSKCSRDGCSVE

Parental  QLGSYDPLPNSHGE-KIVALNLERIRHWIGCGAHLSKPVEKLLGLSGFFPLHPMMITNAERLRRKRAREV
          QLGS.D.L..SHGE.KI...NL..I.H.I..GAH.SKPVE.L.G.SGF.PLHP.MITNAERL.RK.A.EV
Retrocopy QLGSCDALACSHGE>KIQS-NLDQIQH*INFGAHVSKPVE*LSGISGFSPLHPIMITNAERLQRKWAQEV

Parental  LLASQKT
          LL..Q.T
Retrocopy LLVTQRT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_857 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_857 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000003777	1 retrocopy	retro_mputfur_857 ,