RetrogeneDB ID: retro_mputfur_856

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896958.1:2352702..2353175(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TRNAU1AP
• Ensembl ID: ENSMPUG00000015511
• Aliases: None
• Description: tRNA selenocysteine 1 associated protein 1 [Source:HGNC Symbol;Acc:30813]

Sequence

>retro_mputfur_856
GATAGTGGTATGTGGTATGGCTGATCGCCAGCATCCGCCTGTCCTGTTGAAGAGACAATGTGGTTTTGAATCAGACAGGT
TATGTCTAAGGGTTTTGGTTTTATGGAGTTCATGGATGAACTTGTACAGAAGCAAACCCCGACAGGATGCCAGGGAACAG
TGGGACTGGGGTCCAAACCAGTGCTTCTGAGTGCAGCAGTCACTAAAGGGAGCTATGTGAAGCCAGTGAAATATAATCAG
TTGTCCATTTGTAGCTAAAACCAGTGTTTCCAGCAGTACCAGACTACCATGCCTAGTGGAGTTATGACTAGAACACAGGC
AACAGCAGCTACAGTTACTCCTCAAACGACTATCCCCAAAGCTGGACATGGACATAGGAAGAAGTTGAAGGTAATGCCCC
CAGTGACCCCAGGCCAGAGCTCAGTGTGGCCGAGGCCAACAAGGAGTTCATGGAACAGAGAAAGGAGCAGTAT

Alignment

ORF - retro_mputfur_856 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.28 %
• Parental protein coverage: 55.05 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  DDGMLYE-FFVKVYPSCRGGKVVLDQTG-VSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIP
          D.GM.Y.........SC....VVL.QTG..SKG.GF..F.DEL.QK...T.CQG.VGLGSKPV.LS.A..
Retrocopy DSGMWYG<LIASIRLSC*RDNVVLNQTG>MSKGFGFMEFMDELVQKQTPTGCQGTVGLGSKPVLLSAAVT

Parental  KASRVKPVEYSQMYSYSYNQYYQQYQ-NYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDALEDP
          K.S.VKPV.Y.Q....S.NQ..QQYQ..Y.A.W.YD.NTG..SYSY....Y.QS...T.EEV...A..DP
Retrocopy KGSYVKPVKYNQLSICS*NQCFQQYQ<DYHA*WSYD*NTGNSSYSYSSNDYPQSWTWT*EEVEGNAPSDP

Parental  MPQLDVVEANKEFMEQSEELY
          .P.L.V.EANKEFMEQ..E.Y
Retrocopy RPELSVAEANKEFMEQRKEQY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_856 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_856 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000011367	1 retrocopy	retro_amel_1782,
Callithrix jacchus	ENSCJAG00000009717	1 retrocopy	retro_cjac_3928,
Equus caballus	ENSECAG00000012980	1 retrocopy	retro_ecab_452,
Mustela putorius furo	ENSMPUG00000015511	2 retrocopies	retro_mputfur_1185, retro_mputfur_856 ,
Pelodiscus sinensis	ENSPSIG00000006864	1 retrocopy	retro_psin_41,
Tupaia belangeri	ENSTBEG00000008049	1 retrocopy	retro_tbel_923,