RetrogeneDB ID: retro_mputfur_786

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896947.1:2766297..2767056(-)
• Located in intron of: ENSMPUG00000002670

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DNM3
• Ensembl ID: ENSMPUG00000015632
• Aliases: None
• Description: dynamin 3 [Source:HGNC Symbol;Acc:29125]

Sequence

>retro_mputfur_786
AAGAAGGACATTAAGGCTGCCACACTGATGGAAAAGAAATTGCTTCTCTTAAATCCAGCTTACAAACATCTTGCTGATTG
GATGGGGACCCCATTCCTGCAGAAATCGCTTAGTCAGCAACTTACCAGTCACATTTGAGATTCTCTGTCAAACTTCAGGA
ACAAGCTATAAGGACAGTTGCTCTCCACAGAAAATGAAATAGAAGCCTACAAAAACATTAAGCCAGAAGACCCTACCAGG
AAGACCAAAGCATTGCTACATGTAGGTCAACAAGTTGCTGTGGACTTTGAGAGGAGAATCAAAGGGTCAGGTGATCAAGT
AGATACCCTGAAACTCTCAAGGGGTGTGAAAATCAATTGCATTTTCTATGAAGGCTTTCCTTCTGAGATAGTAAAGATGG
AGCTCAGTGAGAAAGAACTATGAGGAGAAATAACCTACGCAATCAAAAACATGCACTGTATCAGGACAGGGTTGTTTATT
CCAGACATGGCAATCCAAGCAATAGTCAGAAAATGAATTGCAAAACTGATAAGGCCTTCCTTGAGGAGTGTATATTGGTA
AAATAAAAATTAATCAACACTATCAAGAAGTATACTCCCCAAAATGGCAAACTTTCCCAGACCCTGCAAAGATATGGAAA
GGATTGTTGCTAACCGTGTTTGACAGCAAGAAGGCAAGACAATGCTCCAGGTACTACTATTGATTGACATTTGAGCCTCC
CACTATAACACCAAGGAGGAAGATTTTATTAACTATGCA

Alignment

ORF - retro_mputfur_786 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.63 %
• Parental protein coverage: 55.24 %
• Number of stop codons detected: 7
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  KKDIKAAMLAERKFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNFRNKLQGQLLSIEHEVEAY
          KKDIKAA.L.E.K..L..PAY.H.AD.MGTP.LQK.L.QQLT.HI.D.L.NFRNKL.GQLLS.E.E.EAY
Retrocopy KKDIKAATLMEKKLLLLNPAYKHLADWMGTPFLQKSLSQQLTSHI*DSLSNFRNKL*GQLLSTENEIEAY

Parental  KNFKPEDPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTLELSGGAKINRIFHERFPFEIVKMEFNEKEL
          KN.KPEDPTRKTKALL...QQ.AVDFE.RI.GSGDQVDTL.LS.G.KIN.IF.E.FP.EIVKME..EKEL
Retrocopy KNIKPEDPTRKTKALLHVGQQVAVDFERRIKGSGDQVDTLKLSRGVKINCIFYEGFPSEIVKMELSEKEL

Parental  RREISYAIKNIHGIRTGLFTPDMAFEAIVKKQIVKLKGPSLKSV-DLVIQELINTVKKCT-KKLANFPRL
          ..EI.YAIKN.H.IRTGLF.PDMA..AIV.K.I.KL..PSL.SV..LV...LINT.KK.T..K.ANFPR.
Retrocopy *GEITYAIKNMHCIRTGLFIPDMAIQAIVRK*IAKLIRPSLRSV<ILVK*KLINTIKKYT>PKMANFPRP

Parental  CEETERIVANHIREREGKTKDQVLLLIDIQVSYINTNHEDFIGFA
          C...ERIVAN.....EGKT..QVLLLIDI..S..NT..EDFI..A
Retrocopy CKDMERIVANRV*QQEGKTMLQVLLLIDI*ASHYNTKEEDFINYA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_786 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_786 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000015632	1 retrocopy	retro_mputfur_786 ,