RetrogeneDB ID: retro_mputfur_775

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896946.1:2728919..2729452(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MREG
• Ensembl ID: ENSMPUG00000007637
• Aliases: None
• Description: melanoregulin [Source:HGNC Symbol;Acc:25478]

Sequence

>retro_mputfur_775
AGTGATAGCAATCCATATTCTTCATTTGGAGCAACTCTGGTGAGAGACGATGACAAGAATTTGTAGAGCATGCCCCTGTC
CCACACAGAGGCAGATGACGACAGAATCTTGTACAATCTGATAGTCGTTCGAAATCAGCAGGCCAAAGATTCAGAGGAGT
GGCAAAAACTCAACTACGATATCTACACCCTGCAGCAGATCCGGAGGGAAGTGAGAAATAGATGGAAACGCATCTTAGAG
GATTTAGGTTTTCAAAAGGAAGCTGACTCTTTGTTGTCCATGACGAAACTCAGCACCATTAGTGATTCTAAAAACACAAG
GAAGGCTCGGGAGATATTGTTAAAACTGGCTGAAGAAACCAGTATTTTTCCAAGCTGGGAGCTCTCGGAGAGATACCTCT
TTGTTGTGAACCGTCTCATTGCTCTCCATGCAGCAGAAGAGTTCTTTAAAATCGCCAGTGGAACTTACCCCAAGAAGCCA
GGAGTCCCAAGCCTGGCCAGAAAGAACTGCACTACCTTCCGTTTCCAAGTCCC

Alignment

ORF - retro_mputfur_775 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.13 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SDSNPYSSFGATLARDDDKNLWSMPHDLSHTEADDDRILYNLIVVRNQQAKDSEEWQKLNYDIYTLRQIR
          SDSNPYSSFGATL.RDDDKNL.SMP..LSHTEADDDRILYNLIVVRNQQAKDSEEWQKLNYDIYTL.QIR
Retrocopy SDSNPYSSFGATLVRDDDKNL*SMP--LSHTEADDDRILYNLIVVRNQQAKDSEEWQKLNYDIYTLQQIR

Parental  REVRNRWKRILEDLGFQKEADSLLSVTKLSTISDSKNTRKAREILLKLAEETSIFPTSWELSERYLFVVD
          REVRNRWKRILEDLGFQKEADSLLS.TKLSTISDSKNTRKAREILLKLAEETSIFP.SWELSERYLFVV.
Retrocopy REVRNRWKRILEDLGFQKEADSLLSMTKLSTISDSKNTRKAREILLKLAEETSIFP-SWELSERYLFVVN

Parental  RLIALDAAEEFFKIASRTY-PKKPGVPSLADGQKELHYLPFPSP
          RLIAL.AAEEFFKIAS.TY.P.....P....GQKELHYLPFPSP
Retrocopy RLIALHAAEEFFKIASGTY<PQEARSPK--PGQKELHYLPFPSP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_775 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_775 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000010037	1 retrocopy	retro_cpor_504,
Mustela putorius furo	ENSMPUG00000007637	1 retrocopy	retro_mputfur_775 ,