RetrogeneDB ID: retro_mputfur_767

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896945.1:10565737..10566128(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EPDR1
• Ensembl ID: ENSMPUG00000018234
• Aliases: None
• Description: ependymin related protein 1 (zebrafish) [Source:HGNC Symbol;Acc:17572]

Sequence

>retro_mputfur_767
CCTTGCCAGGCGCCACAGGAGTGGGAAGACCCCTGGGTTCTGTACCCAGAGAACAGTAGGAGCAACCACCAAACTCTGCT
GTCCTATGACAGGCTCAGCCAGTACATACAGGTGCTTAGTGAGCAAATGGTGCTGATCCCTGGCAAGAGGTTATTTGAAT
ATGCTTTGTTCTATAAGGAAAGATTGATGTTTCAGATTGAGCAAGCCACCAAGCAGTGTTCCAAGATCACCCTGACACCC
CCTGGGACCCTCTAGACATTCCTCAGCAAGCCACCACTGAGGACAAGTACTCCATAGGGGCCCCAGGAGTGGATTGCTGT
CTGGGAGTGGGGGGGCTGACAGAAAGCCAGCTAGCTCATATGAAACCTGGATTGGCATTTATACAGTCAGA

Alignment

ORF - retro_mputfur_767 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.41 %
• Parental protein coverage: 57.27 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PXQAPQQWEGRQVLYRQSSGRNSRALLSYDGLNQRVRVLDERKALIPCKRLFEYILLYKDGVMFQIEQAT
          P.QAPQ.WE...VLY...S..N...LLSYD.L.Q...VL.E...LIP.KRLFEY.L.YK...MFQIEQAT
Retrocopy PCQAPQEWEDPWVLYPENSRSNHQTLLSYDRLSQYIQVLSEQMVLIPGKRLFEYALFYKERLMFQIEQAT

Parental  KQCSKISLTEP-WDPLDIPQNATFEDQYSIG-GPQEQI-TVQEWSDRKSARSYETWIGIYTTK
          KQCSKI.LT.P.WDPLDIPQ.AT.ED.YSIG.GP...........DRK.A.SYETWIGIYT..
Retrocopy KQCSKITLTPP<WDPLDIPQQATTEDKYSIG<GPRSGLLSGSGGADRKPASSYETWIGIYTVR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_767 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_767 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000018234	1 retrocopy	retro_mputfur_767 ,