RetrogeneDB ID: retro_mputfur_757

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896945.1:6959259..6961125(+)
• Located in intron of: ENSMPUG00000012914

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: Tatdn2
• Ensembl ID: ENSMPUG00000017160
• Aliases: None
• Description: TatD DNase domain containing 2 [Source:MGI Symbol;Acc:MGI:3576210]

Sequence

>retro_mputfur_757
CTCAGCCCCTCCCTAGAGGAAATGGCTTCTTTCGAGGAGGCCTACCGCTTTAGGAGCAGTTCCAGACAGAGTGCCAGTAA
CTCCACTAACTCTGAATTTGCAGCCCAGGCTGAGGGTCACAGTGATAAGTCCGAGGACCCAAACAATGTCAGGAGAAAGA
GTGCTACACTGCATGACCAAAGCGCTCCATTCATCTATGGGAAGGGTATCCAGGGCACCCAGGGAAAACTGATGCCAGAA
GCAGAGGAAGCTGTTGGTGCAAAACCCAGCAGAAGAGAGCATCTCAGCCCTGGACAAAGACCTGCCAGGGTCGTCACCTT
CTCTGCTCCTCCGAAAAAGCAGCTGCCAGCCCCCGAGGTCAGAGTGGAGAAGGAAATGATAGCGATAGAAGTCAACAGTT
TTGGTAATAGGAGAGTGATTATGGATCCGCAGGAGAAACCCTGTAAGAAGTTGCCAGGTGACAGAACGGTGCTCAATTTG
GAAAAAGGCTGTCCGGTCCCCAAATTTCTAGACAGACGTGACTGTTGTTCAGAGATCCAAAAGCATCAAGAAAGGGAGGC
AATCGCTGAGCGCCCCTTTTCACTTAGTCACCCGCCTGGTGTAGAAGAGCTAGCTGCAGCCAGATTCCCTCAGGAGAAGC
CAGTCTCCTTGGGTTTCTCAAGAGTTTCAAAGCCTCCATCCTTCACCACTGGTGGTGTCCCGGACCAACCTCATTTGCAC
AGGGGTCTGCGGCAGGCCTATACCAGCTACTGGAGCAGCAGTCCCCAGCCTTCTTACTCTCCCTCTGTGGGCAGCAGCAG
CGACAGCACACCCCAGGCCGGGAGGAACAGCCGCAGCTTTCTCAGTGATTATCCTTCCGGCTCAGAAATGCACTTCCAAA
ACTGGTCCAGAGACTGGAAGGCATTAGAGGAAGGTCCATCCCTGAACTTTCATGCCTCTCGTTTCTCCAGAAGTTTAGAA
GCCCGGGAGCAAACCGTCCAAGAGGAGACCACATCATATCCTTTTGGAGAATATGTGTCTAATTTGGGGCCCAGATGCCA
CTGGAATCGAGGCCTAGGTCATGGTTTCATTGACACCCATTGCCACTTGGATATTCTCTACTCCAAGCTGTCTTTCAAAG
GGACCTTTAGCAAGTTCACAGAAATATACAACTATACCTTTCCTAAGGAATTTCAGGGCTGCATCTCTGATTTTTGTGAT
CCTCGCACACTAAGGGATGGCCTCTGGGAGGAGCTGCTGAAAGATGATCTGGTTTGGGGGGCCTTCGGCTGTCACCCCCA
TTTTGCACGTTACTACAATGACACTCAAGAAAGAAAGCTTCTGTACGCCTTACGGCACCCCAAGGCCATAGCGTTTGGAG
AGATGGGCTTAGATTACTCTTACAAGTGTACCACCCCAGTTCCACAGCAGCACAGGGTATTTGAGAGGCAGCTGCAGCTG
GCCGTGTCTCTGAAGAAGCCCCTGGTGATCCACTGCCGAGAAGCTGATGAAGATCTGCTGGGCATCATGAAAAGAAGAGT
GCCCCCTGACTACAAGATCCATAGGCATTGCTTCACGGGCACCTACCCGCTCATCGAGCCCCTCTTGAAGTATTTTCCCA
ACATGTCTGTGGGGTTCACAGCGGTCCTGACCTACTCTTCTGCCTGGGAGACCCGCGAGGCTCTGAAAATGATCCCACTG
GACAGAATCGTTGTGGAAACTGATGCGCCCTACTTCCTGCCTCGTGGGGTTCCCAAAAGCGTCTGCCAGTATGCCCACCC
GGGCCTGGCCCTGCATACGGTTCGAGAGATTGCCAGAGTCAAAGGTCAGCCTCTCTCCTACACCTTGGCCATCTTGCGCA
AGAACACTAGTTACCTTTACAATCTT

Alignment

ORF - retro_mputfur_757 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.22 %
• Parental protein coverage: 84.52 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VNPSPEEMASLEEEACSLKVDSKDSSRNSTNSEFAAEAEGQNDTNEEPNKVQKRKRDRFRDQGSTVIYLK
          ..PS.EEMAS.EE.A......S..S..NSTNSEFAA.AEG..D..E.PN.V..RK.....DQ....IY.K
Retrocopy LSPSLEEMASFEE-AYRFRSSSRQSASNSTNSEFAAQAEGHSDKSEDPNNV-RRKSATLHDQSAPFIYGK

Parental  AIQGILGKSMPKRKGEATTRPVLSKGERPSRGEEPVRSVTVSPPPKGKESAPEVRAEDDEKAELERSSFC
          .IQG..GK.MP.........P..S..E..S.G..P.R.VT.S.PPK....APEVR.E..E....E..SF.
Retrocopy GIQGTQGKLMPEAEEAVGAKP--SRREHLSPGQRPARVVTFSAPPKKQLPAPEVRVEK-EMIAIEVNSFG

Parental  DRRVVIDPQEKPSEETAGARRTV-LDKHSPALEFLDDSDSNLESQKPKEREVVIEHTSSGSDWSDVDEVS
          .RRV..DPQEKP.....G.R....L.K..P...FLD..D...E.QK..ERE...E...S.S....V.E..
Retrocopy NRRVIMDPQEKPCKKLPGDRTVLNLEKGCPVPKFLDRRDCCSEIQKHQEREAIAERPFSLSHPPGVEELA

Parental  TVRFSQEEPSSLKVSTVPEPSAFPTDYVMYPPHLYSSPWCDYASYWTSSPKPSGYPSVGSSGGDPLQVGR
          ..RF.QE.P.SL..S.V..P..F.T..V...PHL.......Y.SYW.SSP.PS..PSVGSS.....Q.GR
Retrocopy AARFPQEKPVSLGFSRVSKPPSFTTGGVPDQPHLHRGLRQAYTSYWSSSPQPSYSPSVGSSSDSTPQAGR

Parental  SIRGLLSDYSPHSTVSSQNTSRD-QELTEGRSQNSRSFRFSRSSEEEVEEKRALQEEAPPRPCGGHASSS
          ..R..LSDY...S....QN.SRD...L.EG.S.N....RFSRS.E.........QEE....P.G...S..
Retrocopy NSRSFLSDYPSGSEMHFQNWSRDWKALEEGPSLNFHASRFSRSLEAR---EQTVQEETTSYPFGEYVSNL

Parental  LPRNHRESGLEGGFIDTHCHLDMLYSKLSFKGSFTKFRKIYSSSFPKEFQGCISDFCDPRTLTDCLWEEL
          .PR.H...GL..GFIDTHCHLD.LYSKLSFKG.F.KF..IY...FPKEFQGCISDFCDPRTL.D.LWEEL
Retrocopy GPRCHWNRGLGHGFIDTHCHLDILYSKLSFKGTFSKFTEIYNYTFPKEFQGCISDFCDPRTLRDGLWEEL

Parental  LKEDLVWGAFGCHPHFARYYSESQERNLLQALRHPKAVAFGEMGLDYSYKCTTPVPEQHKVFERQLQLAV
          LK.DLVWGAFGCHPHFARYY...QER.LL.ALRHPKA.AFGEMGLDYSYKCTTPVP.QH.VFERQLQLAV
Retrocopy LKDDLVWGAFGCHPHFARYYNDTQERKLLYALRHPKAIAFGEMGLDYSYKCTTPVPQQHRVFERQLQLAV

Parental  SLKKPLVIHCREADEDLLNIMKKFVPSDYKIHRHCFTGSYPVIEPLLKHFPNMSVGFTAVLTYSSAWEAR
          SLKKPLVIHCREADEDLL.IMK..VP.DYKIHRHCFTG.YP.IEPLLK.FPNMSVGFTAVLTYSSAWE.R
Retrocopy SLKKPLVIHCREADEDLLGIMKRRVPPDYKIHRHCFTGTYPLIEPLLKYFPNMSVGFTAVLTYSSAWETR

Parental  DALKQIPLERIIVETDAPYFLPRQVPKSLCQYAHPGLALHTVREIARVKDQPLSHTLATLRENTSRLYNL
          .ALK.IPL.RI.VETDAPYFLPR.VPKS.CQYAHPGLALHTVREIARVK.QPLS.TLA.LR.NTS.LYNL
Retrocopy EALKMIPLDRIVVETDAPYFLPRGVPKSVCQYAHPGLALHTVREIARVKGQPLSYTLAILRKNTSYLYNL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_757 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_757 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000016012	1 retrocopy	retro_amel_46,
Canis familiaris	ENSCAFG00000005131	1 retrocopy	retro_cfam_2059,
Equus caballus	ENSECAG00000010589	1 retrocopy	retro_ecab_1057,
Mustela putorius furo	ENSMPUG00000017160	1 retrocopy	retro_mputfur_757 ,