RetrogeneDB ID: retro_mputfur_745

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896943.1:2366434..2366658(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TNFRSF12A
• Ensembl ID: ENSMPUG00000015243
• Aliases: None
• Description: tumor necrosis factor receptor superfamily, member 12A [Source:HGNC Symbol;Acc:18152]

Sequence

>retro_mputfur_745
ATGGTTCCAAGCCCGAGGCTCGCGCCGCTCCGGCAGCTCCTGGTGCTGGGACTGGAGCGGGCGCTCCTGGGCGCCTCCAC
CCAAGAGCAGGTGCCAGGCACCAGCCCAGCCCTCGGGACAGCTCCTGGAGTGCAGACTTACGCAAGTTCACGGACTGCAC
GTCATGCCCTCCCAGCGACTTCACAGTGCCTTCTGCCTGGGCTTCGCCGCAGCCCTTCCAGCTT

Alignment

ORF - retro_mputfur_745 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.7 %
• Parental protein coverage: 59.69 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MLPGP-LRPLPRLLVLGLGLALLGAAGGERVPGTTPC-SRGSSWSADLDKCMDCASCPARPHSDFCLGCA
          M.P.P.L.PL..LLVLGL..ALLGA...E.VPGT.P...R.SSWSADL.K..DC.SCP....SDF....A
Retrocopy MVPSPRLAPLRQLLVLGLERALLGASTQEQVPGTSPA<PRDSSWSADLRKFTDCTSCPP---SDFTVPSA

Parental  ASPPTSFPL
          ...P..F.L
Retrocopy WASPQPFQL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_745 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_745 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000026197	1 retrocopy	retro_fcat_1365,
Mustela putorius furo	ENSMPUG00000015243	1 retrocopy	retro_mputfur_745 ,
Otolemur garnettii	ENSOGAG00000008584	1 retrocopy	retro_ogar_1720,