RetrogeneDB ID: retro_mputfur_719

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896940.1:7270822..7271089(-)
• Located in intron of: ENSMPUG00000001299

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DYDC1
• Ensembl ID: ENSMPUG00000003562
• Aliases: None
• Description: DPY30 domain containing 1 [Source:HGNC Symbol;Acc:23460]

Sequence

>retro_mputfur_719
CTGAATCCAATAGAGTGGGTAGTATTGTGGATTTACAAGTATAAGGAGATGTGGCTGGAGTAACTGAGACAAAAGGAAAT
GGCCAACGTGGAGCATGAATAAAAACCAGCTCTGATGGGGCAAGAAATGATGGAGAGACTCAAGTCAGAGGAGCTCCTGT
TTCAGCAGCAACAGCTAATATTCTAGCTGGAGTTGGAAATGCAAGAAAAAGACAGGAGATTAGGAGAACTGCAGAGAGCT
CAAGAACAACTAGAGAAGGAGATGAGT

Alignment

ORF - retro_mputfur_719 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.84 %
• Parental protein coverage: 57.59 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VDPIEYLGLWIYKYKENMTMEQLRRKEMADLEHERELAVIEREMMERLKAEELLFQQQQLAFQLELEMQE
          ..PIE...LWIYKYKE.M..E.LR.KEMA..EHE...A....EMMERLK.EELLFQQQQL.F.LELEMQE
Retrocopy LNPIEWVVLWIYKYKE-MWLE*LRQKEMANVEHE*KPALMGQEMMERLKSEELLFQQQQLIF*LELEMQE

Parental  KERQRIEELRRTQEELEKDVT
          K.R.R..EL.R.QE.LEK...
Retrocopy KDR-RLGELQRAQEQLEKEMS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_719 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_719 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000022550	1 retrocopy	retro_fcat_423,
Mustela putorius furo	ENSMPUG00000003562	1 retrocopy	retro_mputfur_719 ,