RetrogeneDB ID: retro_mputfur_676

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896933.1:12318788..12319598(-)
• Located in intron of: ENSMPUG00000005229

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GORASP2
• Ensembl ID: ENSMPUG00000000812
• Aliases: None
• Description: golgi reassembly stacking protein 2, 55kDa [Source:HGNC Symbol;Acc:17500]

Sequence

>retro_mputfur_676
ATCATTGGAGCAGATACAGTCATGAATGTGTCTGAAGATCTGTTCAGCCTTATTGAAACACATGAAGCGAAACCACTGAA
GCTTCATGTGAATAATACAGACACTGATAACTGTCCAGAAGTGATTATTACACCGAATTCTGCATGGGGTGGTGAAGGCA
GCCTAGGATGCGGCATTGGATACGGTTATTTGCATCGAATACCAACCCGCCCGTTTGAAGAAGGGAAGAAAATTTCTCTT
CCTGGACAGATGACTGGTACACCTATTACTCCTCTTAAAGATGGGTTTACAGAGGTCCAGCTGTCCTCAGTTAATCGCCC
ATCTTTGTCACCACCGGGAACTACAGAAATTGAACAGGGTCTGTCTGGACTTTCTATTAGCTCAACTCCACCAGCTGTCA
GTAATGTTTTCAGTACAGGTGTCCCAACAGTGCCATTATTGCCACCACAAGTAAACCAGTCCCTTACTTCTGTGCCACCA
ATGAACCCAGCTACTACATTACTAGGTCTGATGCCTTTACCCACAGGACTGCCTAACCTGCCTGCCCTCCCCAACCTCAA
CCTCCCCACACCGCACGTCATGCCAGGCGTCAGCTTACCGGAACTCGTGAACCCGGGTTTGCCACCTCTTCCTTCCTTGC
CTCCCCGAAACTTATCTGGCATTGCACCTCTCCCCATGCCATACGAGCTCCTCCCGTCATTCCCTTTGGTTCCGGAGGTG
TCTTCTGCAGCAAGCTCAGGGGAGCTGCTCTCCTCTCTCCCACCCACCGGCAGCCCACTCTTCGACCCTGCCACGACCAC
TGCAAGGGCA

Alignment

ORF - retro_mputfur_676 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.3 %
• Parental protein coverage: 62.44 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IIGADTVMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGEGSLGCGIGYGYLHRIPTR
          IIGADTVMN.SEDLFSLIETHEAKPLKL.V.NTDTDNC.EVIITPNSAWGGEGSLGCGIGYGYLHRIPTR
Retrocopy IIGADTVMNVSEDLFSLIETHEAKPLKLHVNNTDTDNCPEVIITPNSAWGGEGSLGCGIGYGYLHRIPTR

Parental  PFEEGKKISLPGQMTGTPITPLKDGFTEVQLSSVNPPSLSPPGTTEIEQGLSGLSISSTPPAVSNVLSTD
          PFEEGKKISLPGQMTGTPITPLKDGFTEVQLSSVN.PSLSPPGTTEIEQGLSGLSISSTPPAVSNV.ST.
Retrocopy PFEEGKKISLPGQMTGTPITPLKDGFTEVQLSSVNRPSLSPPGTTEIEQGLSGLSISSTPPAVSNVFSTG

Parental  RVFVSGVPTVPLLPPQVNQSLTSVPPMNPATTLPGLMPLPTGLPNLPALPNLNLPTPHVMPGVSLPELVN
          ...V..VP..P...PQVNQSLTSVPPMNPATTL.GLMPLPTGLPNLPALPNLNLPTPHVMPGVSLPELVN
Retrocopy ---VPTVPLLP---PQVNQSLTSVPPMNPATTLLGLMPLPTGLPNLPALPNLNLPTPHVMPGVSLPELVN

Parental  PGLPPLPSLPPRNLPGIAPLPMPSEFLPSFPLVPEVSSAASSGELLSSLPPTGSPPSDPVTTTARA
          PGLPPLPSLPPRNL.GIAPLPMP.E.LPSFPLVPEVSSAASSGELLSSLPPTGSP..DP.TTTARA
Retrocopy PGLPPLPSLPPRNLSGIAPLPMPYELLPSFPLVPEVSSAASSGELLSSLPPTGSPLFDPATTTARA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_676 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_676 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000007263	1 retrocopy	retro_dnov_1915,
Mustela putorius furo	ENSMPUG00000000812	1 retrocopy	retro_mputfur_676 ,
Sorex araneus	ENSSARG00000007686	1 retrocopy	retro_sara_305,
Tarsius syrichta	ENSTSYG00000014516	1 retrocopy	retro_tsyr_1657,