RetrogeneDB ID: retro_mputfur_641

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896930.1:5028941..5029270(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SMIM14
• Ensembl ID: ENSMPUG00000006076
• Aliases: None
• Description: small integral membrane protein 14 [Source:HGNC Symbol;Acc:27321]

Sequence

>retro_mputfur_641
AACAGTCCAGTTAAATCAAGCTGGGCAATCATGGCAGAAGGAGGATTCGATCCCTGGGAATGTGTTTCCTCTCATGAACA
TGCAGTGAGAAGGCTGATCAATCTGTTGAGACAGTCCCAGTCCTACTGCACAGACACAGAATGTCTTCAGGAATTACCAG
GCCTCTCTGGTGATAATGGTATCAGTATCATCTTGATCTTCATGGCCTGGATGGTTATTGCAGTGATCTCGGGTTCCTAC
TGAGACCTACTCACCTAAGAGGATCCAACCTAACTGGCAAGCCAACCAGTCCTCATAATGGACAAGATCCACCAGCCCCT
CCTGTGGAC

Alignment

ORF - retro_mputfur_641 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.49 %
• Parental protein coverage: 93.16 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  NSRVKSSWAIMAEGGFDPCECVCSHEHAMRRLINLLRQSQSYCTDTECLQELPGPSGDNGISITMILMAW
          NS.VKSSWAIMAEGGFDP.ECV.SHEHA.RRLINLLRQSQSYCTDTECLQELPG.SGDNGISI..I.MAW
Retrocopy NSPVKSSWAIMAEGGFDPWECVSSHEHAVRRLINLLRQSQSYCTDTECLQELPGLSGDNGISIILIFMAW

Parental  MVIAVI-LFLLRPP-NLRGSNLTGKPTSPHNGQDPPAPPVD
          MVIAVI.L..L..P..LRGSNLTGKPTSPHNGQDPPAPPVD
Retrocopy MVIAVI<LGFLLRPTHLRGSNLTGKPTSPHNGQDPPAPPVD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_641 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_641 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000023287	1 retrocopy	retro_cfam_2156,
Dipodomys ordii	ENSDORG00000001693	2 retrocopies	retro_dord_468, retro_dord_570,
Homo sapiens	ENSG00000163683	1 retrocopy	retro_hsap_3836,
Loxodonta africana	ENSLAFG00000002601	2 retrocopies	retro_lafr_1038, retro_lafr_158,
Mustela putorius furo	ENSMPUG00000006076	1 retrocopy	retro_mputfur_641 ,
Nomascus leucogenys	ENSNLEG00000017113	1 retrocopy	retro_nleu_2132,
Otolemur garnettii	ENSOGAG00000007152	4 retrocopies	retro_ogar_1971, retro_ogar_3123, retro_ogar_3370, retro_ogar_740,