RetrogeneDB ID: retro_mputfur_630

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896927.1:13460677..13461381(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000004484
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: MLLT3
• Ensembl ID: ENSMPUG00000015992
• Aliases: None
• Description: myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 [Source:HGNC Symbol;Acc:7136]

Sequence

>retro_mputfur_630
ATTTCAGATTCCAAAGAACTCTCAGCCAAAAAAAGGAAAAAGAGTAGTTCAGATGCTTTATTTAAGAGTTTTTCTAGCAT
GCCACCATTGTTTCTCATGTGTTCTGCTGACAAAAAACAGATAAAAGATAAATCTCACATCAAGATGGGAAAGGTCAAAA
TTGAAAGTGAGACCTCTGAGAAGAACAGACAACTTTACTGCCATTTGACAATATTGTGGATCCCAATGATTCCGACACGG
AGGAGTACATGTCCTCCAGATCTGATTCTAAACAACCCAGCCCTGCCAACTCCAGCTCCAGCTTCACACTGTCCCAGACC
AGGCAACAAGGTCCTTTAAGGTCTGTAATGAAAGATCTGCATTCCGATGACAATGAGGAATCAGATGAGAGAGAGGATAA
TGACAATGACTCTGAAATGGAGAGACGTGTAAATAGAGGAGGGAGCCAAAGCCGCAGGGTTAGCTTAAGTGACGGCAGCG
ACAGTGAAAGCAGCTCAGCTTCTTCACCCTCCATCACAAACCTCCACCGCCTTTATTAAAAAGCAACAACAACCAGGTTC
TTGAAGTGAAAAGTCCAATAAAGCAAAGCAAATCAGATAAGCAAATAAAGAATGGTGAATGTGACAAAGCTCTACCTACT
GGTGGAGCTTCACAGAAGGTTAATGATGCTGAGGGAGAGACACATTCTGCAACAGGTTGTGAAC

Alignment

ORF - retro_mputfur_630 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.27 %
• Parental protein coverage: 52.16 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  ISDSEELSAKKRKKSSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVKIESETSEK-KKSTLPPF
          ISDS.ELSA.....SSS.ALFKSFSS.PPL.L.CSADKKQIKDKSH.KMGKVKIESETSEK....TL.PF
Retrocopy ISDSKELSAXXXXXSSSDALFKSFSSMPPLFLMCSADKKQIKDKSHIKMGKVKIESETSEK<EQTTLLPF

Parental  DDIVDPNDSDVEENMSSKSDSEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKDLHSDDNEEESDEAEDN
          D.IVDPNDSD.EE.MSS.SDS.QPSPA.SSSS....FT.SQTRQQGPLRS.MKDLHSDDN.EESDE.EDN
Retrocopy DNIVDPNDSDTEEYMSSRSDSKQPSPANSSSS----FTLSQTRQQGPLRSVMKDLHSDDN-EESDEREDN

Parental  DNDSEMERPVNRGGSRSRRVSLSDGSDSESSSASSP-LHHEPPPPLLKTNNNQILEVKSPIKQSKSDKQI
          DNDSEMER.VNRGGS.SRRVSLSDGSDSESSSASSP.LHH.PPPPLLK.NNNQ.LEVKSPIKQSKSDKQI
Retrocopy DNDSEMERRVNRGGSQSRRVSLSDGSDSESSSASSP<LHHKPPPPLLKSNNNQVLEVKSPIKQSKSDKQI

Parental  KNGECDKA-YLDELVELHRRLMTLRERHILQQVRN
          KNGECDKA.YL..LVELHRRLM.LRERHILQQV.N
Retrocopy KNGECDKA>YL--LVELHRRLMMLRERHILQQVVN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_630 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_630 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000003574	1 retrocopy	retro_mdom_1272,
Mustela putorius furo	ENSMPUG00000015992	1 retrocopy	retro_mputfur_630 ,