RetrogeneDB ID: retro_mputfur_616

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896926.1:11060722..11061366(-)
• Located in intron of: ENSMPUG00000010811

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CAPZA1
• Ensembl ID: ENSMPUG00000004977
• Aliases: None
• Description: capping protein (actin filament) muscle Z-line, alpha 1 [Source:HGNC Symbol;Acc:1488]

Sequence

>retro_mputfur_616
TATGAAGAGCAGGTCTTAATTAGAGAACACAGTGTCCTAAGTAGTAACAGATTTGAGATCCAAGAAACTAAATTTCCTTT
AAGTTTGATCACTTACAGAAAGAGGCAAGTGGCCCAGAGAACACTGATAGAGGTCTGAAGTCTTGGAGAGAATCTTCTGA
CAGTACTTTAAAGGCCTGTGTGAAAGATCATTACCTAATGGCTTCTGTACTGTTTATGCCAGAGCTATAGATGGGCAAGA
GACCATCATTGCATGTATTGAAAACCACCAGTTTTAACCAAAAAAATTTCTGGAATGGTTGTGGGAGATCAGAGTGGAAG
TTCACTGCCACACCACCTACAGCTCGGGTGGTGTGAGTAATTAAGATTCAGGTTCACCAATACGAAGATGGCAGTGTTCT
GTTGGTTAGTTGTAAAGATGTGCAGAATTCAATAACTGTTCCCAGTGAAGTCCAAACTGCCAAGGAGTTTATTAAAGTCA
TAGAGCATGCTGAAAATGAATATCAGTCAGCATTTAGTGAAAACTATCAAACAACGTCATACCCCACATTCAAGACCTTG
TGCCAGCAGCTTCCAGTTCCTCACACCAGAATTGACTGGAATAAGATATTCAGCTACAAGATGGCCAGAGCAATGCAGAA
TGCT

Alignment

ORF - retro_mputfur_616 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.73 %
• Parental protein coverage: 75.87 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  YEDQVLITEHGDLGNSRFL-DPRNKISFKFDHLRKEASDPQPEDVDGGLKSWRESCDSALRAYVKDHY-S
          YE.QVLI.EH..L...RF..DPRN.ISFKFDHL.KEAS.P..E..D.GLKSWRES.DS.L.A.VKDHY..
Retrocopy YEEQVLIREHSVLSSNRFE<DPRN*ISFKFDHLQKEASGP--ENTDRGLKSWRESSDSTLKACVKDHY<P

Parental  NGFCTVYAKTIDGQQTIIACIESHQFQPK-NFWNGRWRSEWKFTITPPTAQVVGVLKIQVHYYEDGNVQL
          NGFCTVYA..IDGQ.TIIACIE.HQF.PK.NFWNG..RSEWKFT.TPPTA.VV.V.KIQVH.YEDG.V.L
Retrocopy NGFCTVYARAIDGQETIIACIENHQF*PK>NFWNGCGRSEWKFTATPPTARVV*VIKIQVHQYEDGSVLL

Parental  VSHKDVQDSVTVSNEVQTAKEFIKIIEHAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
          VS.KDVQ.S.TV..EVQTAKEFIK.IEHAENEYQ.A.SENYQT.S..TFK.L..QLPV..T.IDWNKI.S
Retrocopy VSCKDVQNSITVPSEVQTAKEFIKVIEHAENEYQSAFSENYQTTSYPTFKTLCQQLPVPHTRIDWNKIFS

Parental  YKIGKEMQNA
          YK....MQNA
Retrocopy YKMARAMQNA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_616 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_616 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000003570	1 retrocopy	retro_amel_219,
Latimeria chalumnae	ENSLACG00000017963	1 retrocopy	retro_lcha_20,
Myotis lucifugus	ENSMLUG00000009796	1 retrocopy	retro_mluc_2483,
Mustela putorius furo	ENSMPUG00000004977	1 retrocopy	retro_mputfur_616 ,
Mus musculus	ENSMUSG00000070372	4 retrocopies	retro_mmus_179, retro_mmus_1828, retro_mmus_3370, retro_mmus_349,
Oryctolagus cuniculus	ENSOCUG00000000270	6 retrocopies	retro_ocun_1315, retro_ocun_1417, retro_ocun_1787, retro_ocun_301, retro_ocun_527, retro_ocun_555,
Rattus norvegicus	ENSRNOG00000013538	1 retrocopy	retro_rnor_77,
Sorex araneus	ENSSARG00000001278	1 retrocopy	retro_sara_166,
Ictidomys tridecemlineatus	ENSSTOG00000015956	1 retrocopy	retro_itri_1044,
Tarsius syrichta	ENSTSYG00000006259	2 retrocopies	retro_tsyr_179, retro_tsyr_471,
Vicugna pacos	ENSVPAG00000005361	1 retrocopy	retro_vpac_579,