RetrogeneDB ID: retro_mputfur_615

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896926.1:9360571..9361549(-)
• Located in intron of: ENSMPUG00000009908

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NUP37
• Ensembl ID: ENSMPUG00000011898
• Aliases: None
• Description: nucleoporin 37kDa [Source:HGNC Symbol;Acc:29929]

Sequence

>retro_mputfur_615
ATGAAGCAAGATGCCACAAGAAATGCTGCCTACACTGTGGATTGTGAAGATTATGTGCATGTGGTAGAATTTAATCCCTT
TGACAGTGGGGATCCAGGAAACCTAATTGCATATGGTGGCGGTAATTATGTGGTGGTTGGCATATGTACATTTCAGGAGG
AAGAAGCAGACGTTGAAGGAATTCAATATAAAACACTACGAACATTTCAGCATGGAGTCAGGGTCGATGGCATAGCATGG
AGCCCAGAAACTAGACTTGATTCATTGCCTCCAGTAATCAAATTTTGTACTTCAGCTGCTGATATGAAAATAAGATTATT
TACTTCAGATCTTCAAGATAAAAATGAGTATAAGGTTTTAGAGGGCCATTCAGATTTCATTAATGGTTTGGTGTTTGATC
CCAAAGAAGGTCAAGAAATTGCAAGTGTGAGTGATGATCATACCTGCAGGATTTGGAACTTGGAAGGAATGCAGACAGCT
CATTTTGTTCTTCATTCCCCTGGAATGAGTGTGTGCTGGCATCCTGAGGAAAGTTTTAAGCTGATGGTTGCAGAGAAGAA
TGGAACAATCCGGTTTTATGATCTTTTGACTCAACAGGCTATTTTATCTCTTGAATCAGAACAGATGCCATTAATGTCAG
CCCATTGGTGCTTAAAAAATACCTTCAAAGTTGGAGCTGTTGCAGGAAATGATTGGTTAATTTGGGATATTACTCGATCC
AGTTATCCTCAAGATAAGAGACCTGTCCACATGGATCAAGCCTGTTAATTCAGGTGGTCCACAATTAATGAGAACTTGTT
TGCAACCACTGGTTATCCTGGCAAAATTGCAAGCCAGTTTCAAATTCATCATTTAGGACACCCTCAGCCTGTCCTCATTG
GTTCTGTAGCCATCGGATCTGGCCTTTCCTGGCAAAGAACACTCCCACTGTGTGCAATTGGAGGAGACCACAAGCTGTTG
TTTTGGGTGACTGAAATG

Alignment

ORF - retro_mputfur_615 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.08 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MKQDATRNAAYTVDCEDYVHVVEFNPFDSGDPGNLIAYGGGNYVVVGICTFQEEEADVEGIQYKTLRTFQ
          MKQDATRNAAYTVDCEDYVHVVEFNPFDSGDPGNLIAYGGGNYVVVGICTFQEEEADVEGIQYKTLRTFQ
Retrocopy MKQDATRNAAYTVDCEDYVHVVEFNPFDSGDPGNLIAYGGGNYVVVGICTFQEEEADVEGIQYKTLRTFQ

Parental  HGVRVDGIAWSPETRLDSLPPVIKFCTSAADMKIRLFTSDLQDKNEYKVLEGHSDFINGLVFDPKEGQEI
          HGVRVDGIAWSPETRLDSLPPVIKFCTSAADMKIRLFTSDLQDKNEYKVLEGHSDFINGLVFDPKEGQEI
Retrocopy HGVRVDGIAWSPETRLDSLPPVIKFCTSAADMKIRLFTSDLQDKNEYKVLEGHSDFINGLVFDPKEGQEI

Parental  ASVSDDHTCRIWNLEGMQTAHFVLHSPGMSVCWHPEESFKLMVAEKNGTIRFYDLLTQQAILSLESEQMP
          ASVSDDHTCRIWNLEGMQTAHFVLHSPGMSVCWHPEESFKLMVAEKNGTIRFYDLLTQQAILSLESEQMP
Retrocopy ASVSDDHTCRIWNLEGMQTAHFVLHSPGMSVCWHPEESFKLMVAEKNGTIRFYDLLTQQAILSLESEQMP

Parental  LMSAHWCLKNTFKVGAVAGNDWLIWDITRSSYPQDKRPVHMDQACLFRWSTINENLFATTGYPGKIASQF
          LMSAHWCLKNTFKVGAVAGNDWLIWDITRSSYPQDKRPVHMDQAC.FRWSTINENLFATTGYPGKIASQF
Retrocopy LMSAHWCLKNTFKVGAVAGNDWLIWDITRSSYPQDKRPVHMDQAC*FRWSTINENLFATTGYPGKIASQF

Parental  QIHHLGHPQPVLIGSVAVGSGLSWHRTLPLCAIGGDHKLLFWVTEM
          QIHHLGHPQPVLIGSVA.GSGLSW.RTLPLCAIGGDHKLLFWVTEM
Retrocopy QIHHLGHPQPVLIGSVAIGSGLSWQRTLPLCAIGGDHKLLFWVTEM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_615 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_615 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000008843	1 retrocopy	retro_meug_2017,
Mustela putorius furo	ENSMPUG00000011898	1 retrocopy	retro_mputfur_615 ,